Detailed information NTG0105475

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: D082_RS13620
• Genome accession: NZ_CP007542
• Coordinates: 2986457..2987671 (+)
• Length: 404 a.a.
• NCBI ID: WP_028947120.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6714
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2981457..2992671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D082_RS13610 (D082_30000)	-	2983419..2984822 (-)	1404	WP_028947122.1	efflux RND transporter periplasmic adaptor subunit	-
D082_RS13615 (D082_30020)	pilT	2985214..2986311 (+)	1098	WP_038530986.1	type IV pilus twitching motility protein PilT	Machinery gene
D082_RS13620 (D082_30030)	pilC	2986457..2987671 (+)	1215	WP_028947120.1	type II secretion system F family protein	Machinery gene
D082_RS13625 (D082_30060)	gap	2988081..2989100 (-)	1020	WP_028947119.1	type I glyceraldehyde-3-phosphate dehydrogenase	-
D082_RS13630 (D082_30070)	-	2989459..2989887 (+)	429	WP_028947118.1	Npun_F0494 family protein	-
D082_RS13635 (D082_30080)	pdxH	2989899..2990543 (-)	645	WP_028947117.1	pyridoxamine 5'-phosphate oxidase	-
D082_RS13640 (D082_30090)	-	2990605..2991444 (+)	840	WP_028947116.1	segregation/condensation protein A	-
D082_RS13645 (D082_30100)	-	2991469..2992272 (-)	804	WP_028947115.1	hypothetical protein	-

Sequence

Protein

• Length: 404 a.a.
• Molecular weight: 43780.83 Da
• Isoelectric Point: 5.6001

>NTDB_id=105475 D082_RS13620 WP_028947120.1 2986457..2987671(+) (pilC) [Synechocystis sp. PCC 6714]
MATFVAQVKDRKGKTTKAKVEAMSPEQARAILRQQYAAIGTIKPVSGEINLEFLENLLNKVTVKDKAVFSRQFSVMINAG
VAIVRCLGVLSEQCPNPKLKRALTGISGEVQQGTNLSEAMGKYPECFDDLYVSMVEAGETGGVLDEVLNRLSKLLEDMAR
LQNQIKSAMAYPVAVGFLAVVAFLGMTIFLIPVFAGIFDDLGGELPALTKFMLALSAFLRSPMAIIPVVGIIVAVFLFKK
YYGTYAGRRQVDGVMLKLPLFGPLNEKTAVARFCRVFGTLTRSGVPIIQSLEIVCNTVPNKIISDAIAGAIGEIQQGGMM
SLALQQSKVFPSLAIQMISIGEETGELDAMMMKVADFYEDEVEQTVKALTSIIEPAMMVLIAGMVGTILLSMYLPMFAIF
DQLG

Nucleotide

• Length: 1215 bp

>NTDB_id=105475 D082_RS13620 WP_028947120.1 2986457..2987671(+) (pilC) [Synechocystis sp. PCC 6714]
ATGGCTACGTTTGTTGCTCAAGTTAAAGATCGCAAAGGTAAAACCACCAAAGCCAAAGTGGAAGCCATGAGCCCAGAACA
GGCTCGGGCTATTCTCCGCCAGCAGTATGCGGCGATCGGTACAATTAAGCCAGTTTCCGGCGAAATAAACCTCGAATTTC
TGGAAAATTTACTTAATAAAGTTACCGTCAAGGATAAAGCAGTTTTCTCCCGACAGTTTTCCGTCATGATTAACGCCGGC
GTGGCGATCGTTCGCTGCCTAGGAGTGCTTTCTGAACAATGCCCTAACCCGAAACTTAAACGGGCCCTAACAGGTATTAG
TGGGGAAGTGCAACAGGGCACCAACCTTTCTGAAGCTATGGGCAAATACCCTGAATGCTTTGATGATCTCTACGTCAGCA
TGGTAGAAGCCGGAGAAACTGGGGGGGTTTTAGATGAAGTACTCAACCGACTTTCCAAACTGCTCGAAGACATGGCTCGT
CTGCAAAATCAGATTAAGTCTGCCATGGCCTATCCTGTGGCAGTGGGTTTTCTGGCAGTGGTGGCGTTTTTAGGGATGAC
TATCTTTCTTATTCCCGTATTTGCGGGCATTTTTGACGACCTCGGGGGGGAACTGCCTGCCTTAACCAAGTTTATGCTAG
CTTTGAGCGCTTTTCTAAGAAGTCCAATGGCGATTATCCCCGTTGTTGGTATTATCGTGGCCGTTTTTCTCTTCAAGAAA
TATTACGGTACCTATGCAGGGCGGAGACAGGTAGATGGAGTGATGTTGAAACTACCCCTGTTTGGTCCCCTCAATGAAAA
GACCGCCGTGGCGAGGTTTTGTCGAGTATTTGGTACCCTAACCCGGTCTGGAGTACCCATTATTCAATCTTTGGAAATTG
TCTGCAACACTGTCCCCAACAAAATAATTTCTGATGCGATCGCCGGTGCCATCGGTGAAATTCAGCAGGGCGGGATGATG
AGCTTGGCTCTGCAACAAAGTAAGGTGTTTCCCTCCTTGGCGATTCAGATGATCAGTATTGGTGAAGAGACGGGGGAACT
GGATGCCATGATGATGAAGGTGGCAGACTTTTACGAAGACGAGGTGGAACAAACGGTAAAAGCTTTGACTAGTATTATTG
AGCCAGCCATGATGGTGTTAATTGCTGGCATGGTGGGGACAATTCTCCTTTCCATGTACTTACCGATGTTTGCCATCTTC
GATCAGTTGGGTTAA

Domains

Predicted by InterProScan.

• Type II secretion system (T2SS), protein F (T2SSF) (273-395)

• Type II secretion system (T2SS), protein F (T2SSF) (69-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	40.098	100	0.406