Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACDW34_RS16165 Genome accession   NZ_CP167896
Coordinates   3315116..3315535 (+) Length   139 a.a.
NCBI ID   WP_372403636.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3310116..3320535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS16140 (ACDW34_16140) bfr 3310592..3311056 (+) 465 WP_286433476.1 bacterioferritin -
  ACDW34_RS16145 (ACDW34_16145) - 3311108..3312748 (-) 1641 WP_372403633.1 Wzy polymerase domain-containing protein -
  ACDW34_RS16150 (ACDW34_16150) tfpZ 3312817..3313551 (-) 735 WP_372405216.1 TfpX/TfpZ family type IV pilin accessory protein -
  ACDW34_RS16155 (ACDW34_16155) - 3313554..3314165 (-) 612 WP_372403634.1 hypothetical protein -
  ACDW34_RS16160 (ACDW34_16160) - 3314232..3314723 (-) 492 WP_372403635.1 pilin -
  ACDW34_RS16165 (ACDW34_16165) pilE 3315116..3315535 (+) 420 WP_372403636.1 pilin Machinery gene
  ACDW34_RS16170 (ACDW34_16170) - 3315598..3317520 (+) 1923 WP_372403637.1 tetratricopeptide repeat protein -
  ACDW34_RS16175 (ACDW34_16175) - 3317573..3318424 (+) 852 WP_372403638.1 glycosyltransferase family 2 protein -
  ACDW34_RS16180 (ACDW34_16180) - 3318430..3320136 (+) 1707 WP_372403639.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14386.54 Da        Isoelectric Point: 9.0042

>NTDB_id=1040180 ACDW34_RS16165 WP_372403636.1 3315116..3315535(+) (pilE) [Acinetobacter piscicola strain p38]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYTKRTHVSEGLSLAGGAKAGVTEFYSSNGHWPLNNESAGLAATATDIK
GNAVSSVTVASGVITIAYNDKVDNGKTVILSPLAATGSVTWKCKPGTGMPTKYLPSNCR

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1040180 ACDW34_RS16165 WP_372403636.1 3315116..3315535(+) (pilE) [Acinetobacter piscicola strain p38]
ATGAATGCTCAAAAAGGCTTTACATTAATCGAGCTGATGATTGTGGTCGCTATTATTGGTATTTTGGCTGCAATTGCAAT
TCCTGCTTATCAGGACTACACCAAACGTACTCACGTTTCTGAAGGTTTGAGCTTGGCTGGTGGTGCAAAAGCAGGGGTAA
CTGAGTTTTATTCATCAAATGGTCATTGGCCTTTAAACAATGAATCGGCTGGTTTGGCTGCTACTGCAACTGACATTAAA
GGCAATGCAGTGTCATCTGTTACTGTTGCTAGTGGTGTGATCACTATCGCATACAATGATAAAGTAGATAATGGTAAAAC
TGTTATTTTAAGTCCACTAGCTGCTACTGGTTCTGTGACTTGGAAATGTAAACCAGGTACAGGTATGCCAACCAAATATC
TACCTTCAAACTGTCGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(36-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

49.359

100

0.554
  pilE Neisseria gonorrhoeae strain FA1090

48.077

100

0.54
  pilA2 Legionella pneumophila strain ERS1305867

52.899

99.281

0.525
  pilA2 Legionella pneumophila str. Paris

52.206

97.842

0.511
  comP Acinetobacter baylyi ADP1

46.622

100

0.496
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.482
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

35.87

100

0.475
  pilA/pilA1 Eikenella corrodens VA1

44

100

0.475
  pilA Haemophilus influenzae 86-028NP

43.066

98.561

0.424
  pilA Haemophilus influenzae Rd KW20

43.066

98.561

0.424
  pilA Pseudomonas aeruginosa PAK

36.306

100

0.41
  pilA Vibrio campbellii strain DS40M4

37.415

100

0.396
  pilA Acinetobacter baumannii strain A118

39.568

100

0.396
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.13

99.281

0.388
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.406

99.281

0.381

Multiple sequence alignment