Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACCQ16_RS15675 | Genome accession | NZ_CP167864 |
| Coordinates | 3628021..3628431 (-) | Length | 136 a.a. |
| NCBI ID | WP_029820068.1 | Uniprot ID | - |
| Organism | Xanthomonas sp. NCPPB 1062 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3623021..3633431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCQ16_RS15660 (ACCQ16_15660) | pilR | 3624038..3625432 (+) | 1395 | WP_042773941.1 | sigma-54 dependent transcriptional regulator | Regulator |
| ACCQ16_RS15665 (ACCQ16_15665) | pilB | 3625647..3627383 (-) | 1737 | WP_277572535.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCQ16_RS15670 (ACCQ16_15670) | - | 3627426..3627836 (-) | 411 | WP_029820067.1 | pilin | - |
| ACCQ16_RS15675 (ACCQ16_15675) | pilA | 3628021..3628431 (-) | 411 | WP_029820068.1 | pilin | Machinery gene |
| ACCQ16_RS15680 (ACCQ16_15680) | pilC | 3628765..3630021 (+) | 1257 | WP_014090856.1 | type II secretion system F family protein | Machinery gene |
| ACCQ16_RS15685 (ACCQ16_15685) | - | 3630028..3630891 (+) | 864 | WP_008576868.1 | A24 family peptidase | - |
| ACCQ16_RS15690 (ACCQ16_15690) | coaE | 3630905..3631510 (+) | 606 | WP_014090857.1 | dephospho-CoA kinase | - |
| ACCQ16_RS15695 (ACCQ16_15695) | - | 3631582..3632916 (-) | 1335 | WP_008576864.1 | HAMP domain-containing sensor histidine kinase | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14258.69 Da Isoelectric Point: 8.4764
>NTDB_id=1039992 ACCQ16_RS15675 WP_029820068.1 3628021..3628431(-) (pilA) [Xanthomonas sp. NCPPB 1062]
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAVADITELGLKSPSERCT
IAPITALSATGTIECTLKGNTQVVGKKVTLTRATDGTWTCKTDALKKYAPAGCPGA
MKKQNGFTLIELMIVIAIIAILAAIALPMYQDYVAKSQVTAGLAEINPGKTQYEVALNEGKTAVADITELGLKSPSERCT
IAPITALSATGTIECTLKGNTQVVGKKVTLTRATDGTWTCKTDALKKYAPAGCPGA
Nucleotide
Download Length: 411 bp
>NTDB_id=1039992 ACCQ16_RS15675 WP_029820068.1 3628021..3628431(-) (pilA) [Xanthomonas sp. NCPPB 1062]
ATGAAGAAGCAAAACGGTTTTACGCTGATCGAACTTATGATCGTCATTGCAATCATCGCGATTCTGGCTGCGATTGCCCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGTCACCGCCGGTCTCGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTAGCGCTAAACGAAGGCAAGACTGCCGTTGCAGACATCACCGAGCTGGGTCTGAAGTCTCCTTCTGAGCGCTGCACC
ATTGCGCCGATCACCGCTCTGAGCGCTACCGGCACCATCGAGTGCACTCTGAAGGGGAATACGCAGGTTGTGGGTAAGAA
GGTCACGCTGACCCGTGCAACTGATGGTACCTGGACCTGCAAGACGGACGCGCTGAAGAAGTACGCGCCTGCTGGCTGCC
CGGGTGCTTAA
ATGAAGAAGCAAAACGGTTTTACGCTGATCGAACTTATGATCGTCATTGCAATCATCGCGATTCTGGCTGCGATTGCCCT
GCCGATGTATCAGGACTACGTCGCCAAGTCGCAGGTCACCGCCGGTCTCGCTGAAATCAATCCTGGCAAGACGCAGTACG
AAGTAGCGCTAAACGAAGGCAAGACTGCCGTTGCAGACATCACCGAGCTGGGTCTGAAGTCTCCTTCTGAGCGCTGCACC
ATTGCGCCGATCACCGCTCTGAGCGCTACCGGCACCATCGAGTGCACTCTGAAGGGGAATACGCAGGTTGTGGGTAAGAA
GGTCACGCTGACCCGTGCAACTGATGGTACCTGGACCTGCAAGACGGACGCGCTGAAGAAGTACGCGCCTGCTGGCTGCC
CGGGTGCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Acinetobacter baumannii strain A118 |
51.095 |
100 |
0.515 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
50.37 |
99.265 |
0.5 |
| pilA | Pseudomonas aeruginosa PAK |
43.243 |
100 |
0.471 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
44.03 |
98.529 |
0.434 |
| pilA | Vibrio cholerae strain A1552 |
41.844 |
100 |
0.434 |
| pilA | Vibrio cholerae C6706 |
41.844 |
100 |
0.434 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.844 |
100 |
0.434 |
| comP | Acinetobacter baylyi ADP1 |
38.926 |
100 |
0.426 |
| pilA2 | Legionella pneumophila str. Paris |
41.912 |
100 |
0.419 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.441 |
100 |
0.404 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
38.931 |
96.324 |
0.375 |
| pilE | Neisseria gonorrhoeae MS11 |
39.2 |
91.912 |
0.36 |