Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ16_RS15680 Genome accession   NZ_CP167864
Coordinates   3628765..3630021 (+) Length   418 a.a.
NCBI ID   WP_014090856.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1062     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3623765..3635021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ16_RS15660 (ACCQ16_15660) pilR 3624038..3625432 (+) 1395 WP_042773941.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ16_RS15665 (ACCQ16_15665) pilB 3625647..3627383 (-) 1737 WP_277572535.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ16_RS15670 (ACCQ16_15670) - 3627426..3627836 (-) 411 WP_029820067.1 pilin -
  ACCQ16_RS15675 (ACCQ16_15675) pilA 3628021..3628431 (-) 411 WP_029820068.1 pilin Machinery gene
  ACCQ16_RS15680 (ACCQ16_15680) pilC 3628765..3630021 (+) 1257 WP_014090856.1 type II secretion system F family protein Machinery gene
  ACCQ16_RS15685 (ACCQ16_15685) - 3630028..3630891 (+) 864 WP_008576868.1 A24 family peptidase -
  ACCQ16_RS15690 (ACCQ16_15690) coaE 3630905..3631510 (+) 606 WP_014090857.1 dephospho-CoA kinase -
  ACCQ16_RS15695 (ACCQ16_15695) - 3631582..3632916 (-) 1335 WP_008576864.1 HAMP domain-containing sensor histidine kinase -
  ACCQ16_RS15700 (ACCQ16_15700) - 3632909..3633586 (-) 678 WP_003490678.1 response regulator transcription factor -
  ACCQ16_RS15705 (ACCQ16_15705) - 3633612..3634055 (-) 444 WP_071118754.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45420.71 Da        Isoelectric Point: 10.2682

>NTDB_id=1039993 ACCQ16_RS15680 WP_014090856.1 3628765..3630021(+) (pilC) [Xanthomonas sp. NCPPB 1062]
MAAVRGVVKTKTASQFEQTSPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPTVVKVKPKPLFGAAGKKIGAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLIKAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVVGFIFAYKRSPSMQHGMDRVILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=1039993 ACCQ16_RS15680 WP_014090856.1 3628765..3630021(+) (pilC) [Xanthomonas sp. NCPPB 1062]
ATGGCAGCAGTACGTGGTGTAGTGAAGACTAAAACCGCCTCGCAATTCGAGCAGACCAGCCCATTTGTCTGGGAGGGAAC
AGACAAGCGCGGCGTGAAGATGAAAGGTGAACAGACCGCAAAAAATGCCAACTTGCTACGTGCAGAGCTACGCAGACAAG
GGATCACACCCACCGTAGTGAAGGTAAAACCGAAGCCCCTATTTGGTGCTGCCGGCAAGAAGATCGGTGCAAAAGACATC
TCCTTCTTCAGCCGGCAAATGGCGACCATGATGAAGTCCGGCGTTCCTATCGTCGGAGCACTTGAGATCATCGGCAGCGG
ACAGAAGAATCCGCGCATGCGGAACATGGTCGGGCAAATCCGTGCTGACATAGAGGGAGGTTCGTCGCTGCATGAAGCGG
TCAGCAGGCACCCGGTGCAGTTCGATGAGCTCTATAGAAATCTCATCAAAGCTGGCGAAGGCGCCGGCGTTTTGGAAACA
GTGCTAGATACCATAGCAACGTACAAAGAAAACATTGAGGCGCTTAAGGGCAAGATCAAAAAAGCCTTGTTCTATCCAGC
AATGGTTGTTGCAGTGGCACTGCTTGTCAGCGCGATCCTACTCATCTTTGTCGTACCTCAATTTGAGGACGTGTTCAAGG
GTTTCGGCGCCGAATTGCCCGCATTTACCCAGATGATCGTAAACATGTCACGCTTTATGGTGTCTTGGTGGTGGCTTATT
CTTTTCGTCGCGATCGGCGCCGTTGTCGGCTTCATTTTCGCCTACAAGCGCTCCCCTTCGATGCAACATGGAATGGACCG
AGTTATCCTCAAAGTACCGATTATCGGTCAAATCATGCACAACAGCTCCATTGCGCGTTTTGCGCGGACTACTGCGGTGA
CGTTCAAAGCCGGTGTCCCGCTTGTCGAAGCATTGAGCATTGTGGCTGGCGCAACTGGCAACTCGGTTTACGAAGCTGCC
GTATTGCGGATGCGCGACGACGTGTCCGTGGGCTACCCGGTCAACGTAGCGATGAAACAGGTCAACCTGTTCCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAAC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCTTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.463

97.129

0.51
  pilC Pseudomonas stutzeri DSM 10701

52.5

95.694

0.502
  pilC Acinetobacter baylyi ADP1

50.614

97.368

0.493
  pilC Acinetobacter baumannii D1279779

50.378

94.976

0.478
  pilG Neisseria gonorrhoeae MS11

44.11

95.455

0.421
  pilG Neisseria meningitidis 44/76-A

43.609

95.455

0.416
  pilC Vibrio cholerae strain A1552

41.089

96.651

0.397
  pilC Vibrio campbellii strain DS40M4

40.15

95.933

0.385

Multiple sequence alignment