Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ16_RS15660 Genome accession   NZ_CP167864
Coordinates   3624038..3625432 (+) Length   464 a.a.
NCBI ID   WP_042773941.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 1062     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3619038..3630432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ16_RS15640 (ACCQ16_15640) - 3619281..3619625 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCQ16_RS15645 (ACCQ16_15645) sucD 3619796..3620671 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCQ16_RS15650 (ACCQ16_15650) sucC 3620696..3621865 (-) 1170 WP_057681815.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ16_RS15655 (ACCQ16_15655) - 3622097..3623710 (+) 1614 WP_218490629.1 PAS domain-containing sensor histidine kinase -
  ACCQ16_RS15660 (ACCQ16_15660) pilR 3624038..3625432 (+) 1395 WP_042773941.1 sigma-54 dependent transcriptional regulator Regulator
  ACCQ16_RS15665 (ACCQ16_15665) pilB 3625647..3627383 (-) 1737 WP_277572535.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ16_RS15670 (ACCQ16_15670) - 3627426..3627836 (-) 411 WP_029820067.1 pilin -
  ACCQ16_RS15675 (ACCQ16_15675) pilA 3628021..3628431 (-) 411 WP_029820068.1 pilin Machinery gene
  ACCQ16_RS15680 (ACCQ16_15680) pilC 3628765..3630021 (+) 1257 WP_014090856.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50192.59 Da        Isoelectric Point: 6.5718

>NTDB_id=1039990 ACCQ16_RS15660 WP_042773941.1 3624038..3625432(+) (pilR) [Xanthomonas sp. NCPPB 1062]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAVPNGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1039990 ACCQ16_RS15660 WP_042773941.1 3624038..3625432(+) (pilR) [Xanthomonas sp. NCPPB 1062]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCTTGCGCATCAGCACCGCGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGCGCCCCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGA
CGCATTGAATCACTACGGCTTCCCAGGCAACGTACGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCG
GCCGAGCCGCGCGAAGCCGTCGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGC
TGCGTTACAAGTTGAAGAAACTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment