Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACDI35_RS06235 Genome accession   NZ_CP167834
Coordinates   1407403..1407831 (+) Length   142 a.a.
NCBI ID   WP_007962467.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cajani strain NCPPB 2063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402403..1412831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI35_RS06215 (ACDI35_06205) - 1403369..1404082 (-) 714 Protein_1208 DUF6531 domain-containing protein -
  ACDI35_RS06220 (ACDI35_06210) coaE 1404306..1404914 (-) 609 WP_022558665.1 dephospho-CoA kinase -
  ACDI35_RS06225 (ACDI35_06215) - 1404928..1405791 (-) 864 WP_003491180.1 A24 family peptidase -
  ACDI35_RS06230 (ACDI35_06220) pilC 1405798..1407057 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ACDI35_RS06235 (ACDI35_06225) comP 1407403..1407831 (+) 429 WP_007962467.1 pilin Machinery gene
  ACDI35_RS06240 (ACDI35_06230) pilA2 1407929..1408342 (+) 414 WP_089111877.1 pilin Machinery gene
  ACDI35_RS06245 (ACDI35_06235) pilB 1408384..1410120 (+) 1737 WP_372376105.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDI35_RS06250 (ACDI35_06240) pilR 1410570..1412024 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14527.67 Da        Isoelectric Point: 8.4798

>NTDB_id=1039686 ACDI35_RS06235 WP_007962467.1 1407403..1407831(+) (comP) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGAANSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1039686 ACDI35_RS06235 WP_007962467.1 1407403..1407831(+) (comP) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCTGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTGGGCGCTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACTGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

55.319

99.296

0.549
  pilA2 Legionella pneumophila strain ERS1305867

54.61

99.296

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.566

100

0.486
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

39.073

100

0.415
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.86

100

0.401
  pilA/pilAII Pseudomonas stutzeri DSM 10701

39.583

100

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

42.636

90.845

0.387
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373

Multiple sequence alignment