Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDI35_RS06250 Genome accession   NZ_CP167834
Coordinates   1410570..1412024 (-) Length   484 a.a.
NCBI ID   WP_022558668.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cajani strain NCPPB 2063     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1405570..1417024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI35_RS06230 (ACDI35_06220) pilC 1405798..1407057 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ACDI35_RS06235 (ACDI35_06225) comP 1407403..1407831 (+) 429 WP_007962467.1 pilin Machinery gene
  ACDI35_RS06240 (ACDI35_06230) pilA2 1407929..1408342 (+) 414 WP_089111877.1 pilin Machinery gene
  ACDI35_RS06245 (ACDI35_06235) pilB 1408384..1410120 (+) 1737 WP_372376105.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDI35_RS06250 (ACDI35_06240) pilR 1410570..1412024 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator
  ACDI35_RS06255 (ACDI35_06245) - 1412294..1413907 (-) 1614 WP_372376106.1 PAS domain-containing sensor histidine kinase -
  ACDI35_RS06260 (ACDI35_06250) sucC 1414140..1415309 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACDI35_RS06265 (ACDI35_06255) sucD 1415334..1416209 (+) 876 WP_372376107.1 succinate--CoA ligase subunit alpha -
  ACDI35_RS06270 (ACDI35_06260) - 1416383..1416660 (+) 278 Protein_1219 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52498.30 Da        Isoelectric Point: 7.0128

>NTDB_id=1039689 ACDI35_RS06250 WP_022558668.1 1410570..1412024(-) (pilR) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039689 ACDI35_RS06250 WP_022558668.1 1410570..1412024(-) (pilR) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCTCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAGAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTCGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment