Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACDI35_RS06230 Genome accession   NZ_CP167834
Coordinates   1405798..1407057 (-) Length   419 a.a.
NCBI ID   WP_033836749.1    Uniprot ID   A0A7Z7NHG2
Organism   Xanthomonas axonopodis pv. cajani strain NCPPB 2063     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1400798..1412057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI35_RS06215 (ACDI35_06205) - 1403369..1404082 (-) 714 Protein_1208 DUF6531 domain-containing protein -
  ACDI35_RS06220 (ACDI35_06210) coaE 1404306..1404914 (-) 609 WP_022558665.1 dephospho-CoA kinase -
  ACDI35_RS06225 (ACDI35_06215) - 1404928..1405791 (-) 864 WP_003491180.1 A24 family peptidase -
  ACDI35_RS06230 (ACDI35_06220) pilC 1405798..1407057 (-) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ACDI35_RS06235 (ACDI35_06225) comP 1407403..1407831 (+) 429 WP_007962467.1 pilin Machinery gene
  ACDI35_RS06240 (ACDI35_06230) pilA2 1407929..1408342 (+) 414 WP_089111877.1 pilin Machinery gene
  ACDI35_RS06245 (ACDI35_06235) pilB 1408384..1410120 (+) 1737 WP_372376105.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDI35_RS06250 (ACDI35_06240) pilR 1410570..1412024 (-) 1455 WP_022558668.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45878.36 Da        Isoelectric Point: 10.3363

>NTDB_id=1039685 ACDI35_RS06230 WP_033836749.1 1405798..1407057(-) (pilC) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039685 ACDI35_RS06230 WP_033836749.1 1405798..1407057(-) (pilC) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAACTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAGCCACTTTTCGGCGCTGCCGGCAAAAAAGTGGGTCCCAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACCATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAGAATCCGCGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCAGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATCGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACGCAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATTTTTGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGCATAACAGTTCCATCGCAAGGTTTGCGCGTACGACCGCCG
TGACCTTCAAGGCCGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTAGCCGAGTACTTCG
AACAGGAAGTCAACAATGCCGTGGATGCGTTGAGCAGCTTGCTGGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z7NHG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

52.97

96.42

0.511
  pilC Legionella pneumophila strain ERS1305867

51.605

96.659

0.499
  pilC Acinetobacter baumannii D1279779

51.238

96.42

0.494
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.5

95.465

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.905

95.704

0.363

Multiple sequence alignment