Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | ACCQ23_RS17535 | Genome accession | NZ_CP167230 |
| Coordinates | 3987461..3987889 (-) | Length | 142 a.a. |
| NCBI ID | WP_005921364.1 | Uniprot ID | - |
| Organism | Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3982461..3992889
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCQ23_RS17520 (ACCQ23_17520) | pilR | 3983497..3984951 (+) | 1455 | WP_372177098.1 | sigma-54-dependent transcriptional regulator | Regulator |
| ACCQ23_RS17525 (ACCQ23_17525) | pilB | 3985173..3986909 (-) | 1737 | WP_372177099.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACCQ23_RS17530 (ACCQ23_17530) | pilA | 3986951..3987364 (-) | 414 | WP_372177100.1 | pilin | Machinery gene |
| ACCQ23_RS17535 (ACCQ23_17535) | comP | 3987461..3987889 (-) | 429 | WP_005921364.1 | pilin | Machinery gene |
| ACCQ23_RS17540 (ACCQ23_17540) | pilC | 3988237..3989496 (+) | 1260 | WP_372177101.1 | type II secretion system F family protein | Machinery gene |
| ACCQ23_RS17545 (ACCQ23_17545) | - | 3989503..3990366 (+) | 864 | WP_184419734.1 | A24 family peptidase | - |
| ACCQ23_RS17550 (ACCQ23_17550) | coaE | 3990380..3990991 (+) | 612 | WP_184419733.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14513.65 Da Isoelectric Point: 8.4798
>NTDB_id=1039023 ACCQ23_RS17535 WP_005921364.1 3987461..3987889(-) (comP) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
Nucleotide
Download Length: 429 bp
>NTDB_id=1039023 ACCQ23_RS17535 WP_005921364.1 3987461..3987889(-) (comP) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
ATGAAGAAGCAACAAGGCTTTACTCTGATCGAATTGATGATCGTTGTCGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGCGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGTGTCGGTGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATTGCTTGCACACCCGCAACTGGCAACATCGTCGTAACCGGCGATGCAACGCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTCGGCGGTGCTAACTCGGCAGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
ATGAAGAAGCAACAAGGCTTTACTCTGATCGAATTGATGATCGTTGTCGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGCGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGTGTCGGTGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATTGCTTGCACACCCGCAACTGGCAACATCGTCGTAACCGGCGATGCAACGCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTCGGCGGTGCTAACTCGGCAGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54.305 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
55.319 |
99.296 |
0.549 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.61 |
99.296 |
0.542 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.463 |
100 |
0.479 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.411 |
100 |
0.408 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.94 |
100 |
0.408 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.278 |
100 |
0.408 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.559 |
100 |
0.408 |
| pilA | Haemophilus influenzae 86-028NP |
38.971 |
95.775 |
0.373 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.31 |
90.845 |
0.366 |