Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCQ23_RS17520 Genome accession   NZ_CP167230
Coordinates   3983497..3984951 (+) Length   484 a.a.
NCBI ID   WP_372177098.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3978497..3989951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ23_RS17500 (ACCQ23_17500) - 3978799..3979143 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCQ23_RS17505 (ACCQ23_17505) sucD 3979314..3980189 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCQ23_RS17510 (ACCQ23_17510) sucC 3980214..3981383 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCQ23_RS17515 (ACCQ23_17515) - 3981615..3983228 (+) 1614 WP_011348336.1 PAS domain-containing sensor histidine kinase -
  ACCQ23_RS17520 (ACCQ23_17520) pilR 3983497..3984951 (+) 1455 WP_372177098.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ23_RS17525 (ACCQ23_17525) pilB 3985173..3986909 (-) 1737 WP_372177099.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ23_RS17530 (ACCQ23_17530) pilA 3986951..3987364 (-) 414 WP_372177100.1 pilin Machinery gene
  ACCQ23_RS17535 (ACCQ23_17535) comP 3987461..3987889 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCQ23_RS17540 (ACCQ23_17540) pilC 3988237..3989496 (+) 1260 WP_372177101.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52570.36 Da        Isoelectric Point: 6.8289

>NTDB_id=1039020 ACCQ23_RS17520 WP_372177098.1 3983497..3984951(+) (pilR) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPYGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039020 ACCQ23_RS17520 WP_372177098.1 3983497..3984951(+) (pilR) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATACGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCTGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACTGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGTGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTAATTGAGCTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCCGTCCCTTACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTACGTTATAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.851

95.661

0.601
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment