Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACCQ23_RS17540 Genome accession   NZ_CP167230
Coordinates   3988237..3989496 (+) Length   419 a.a.
NCBI ID   WP_372177101.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3983237..3994496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ23_RS17520 (ACCQ23_17520) pilR 3983497..3984951 (+) 1455 WP_372177098.1 sigma-54-dependent transcriptional regulator Regulator
  ACCQ23_RS17525 (ACCQ23_17525) pilB 3985173..3986909 (-) 1737 WP_372177099.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCQ23_RS17530 (ACCQ23_17530) pilA 3986951..3987364 (-) 414 WP_372177100.1 pilin Machinery gene
  ACCQ23_RS17535 (ACCQ23_17535) comP 3987461..3987889 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCQ23_RS17540 (ACCQ23_17540) pilC 3988237..3989496 (+) 1260 WP_372177101.1 type II secretion system F family protein Machinery gene
  ACCQ23_RS17545 (ACCQ23_17545) - 3989503..3990366 (+) 864 WP_184419734.1 A24 family peptidase -
  ACCQ23_RS17550 (ACCQ23_17550) coaE 3990380..3990991 (+) 612 WP_184419733.1 dephospho-CoA kinase -
  ACCQ23_RS17555 (ACCQ23_17555) - 3991173..3992933 (+) 1761 WP_372177102.1 DUF6531 domain-containing protein -
  ACCQ23_RS17560 (ACCQ23_17560) - 3992975..3994119 (+) 1145 WP_372176659.1 IS3 family transposase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45894.36 Da        Isoelectric Point: 10.3363

>NTDB_id=1039024 ACCQ23_RS17540 WP_372177101.1 3988237..3989496(+) (pilC) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQSARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRVILKVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1039024 ACCQ23_RS17540 WP_372177101.1 3988237..3989496(+) (pilC) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
ATGTCAGTCGCGCGTAACGTGATCAAGAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAACCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGTCGGCGCGCAATGTGAACATGTTGCGTGCAGAACTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAGCCGCTTTTCGGCGCTGCCGGCAAAAAAGTGGGCCCCAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACCATGATGAAGTCGGGCGTTCCCATCGTAGGATCGCTCGAGATTATTGGCGA
GGGGCACAAGAACCCACGAATGAGGAAAATGGTCGGTCAGATAAGGACCGATATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCACCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTTTTAGACACAGTCGCCAATTACAAAGAAAACATCGAGGCCCTGAAAGGCAAGATCAAGAAAGCGCTCTTTTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTCCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACGCAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTATTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATTTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGGATGGA
TCGCGTGATCTTGAAGGTGCCTGTAATCGGCCAAATTATGCATAACAGCTCCATCGCAAGGTTTGCGCGTACCACCGCCG
TGACCTTCAAGGCTGGCGTGCCGCTCGTGGAAGCACTTGGCATTGTTGCGGGGGCAACTGGCAACAAAGTTTATGAAGAA
GCAGTGTTGCGCATGCGTGACGACGTGTCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCAATTGGCGAAGAGGCCGGTGCGCTGGATGCCATGCTGTTCAAGGTCGCCGAGTACTTCG
AACAGGAAGTCAACAATGCCGTGGATGCGTTAAGCAGCTTGCTGGAACCAATGATTATGGTGTTCATCGGCACTATTGTA
GGCGGCATGGTGATTGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.293

94.511

0.513
  pilC Acinetobacter baylyi ADP1

52.475

96.42

0.506
  pilC Legionella pneumophila strain ERS1305867

51.852

96.659

0.501
  pilC Acinetobacter baumannii D1279779

50.99

96.42

0.492
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.389

95.704

0.425
  pilC Vibrio cholerae strain A1552

41.25

95.465

0.394
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.656

95.704

0.36

Multiple sequence alignment