Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACCP93_RS14600 Genome accession   NZ_CP167216
Coordinates   3381572..3382000 (-) Length   142 a.a.
NCBI ID   WP_005921364.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376572..3387000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS14580 (ACCP93_14580) pilR 3377219..3378673 (+) 1455 WP_218558977.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP93_RS14585 (ACCP93_14585) pilB 3378887..3379006 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP93_RS14590 (ACCP93_14590) pilB 3379284..3381020 (-) 1737 WP_218558981.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP93_RS14595 (ACCP93_14595) pilA2 3381062..3381475 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCP93_RS14600 (ACCP93_14600) comP 3381572..3382000 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCP93_RS14605 (ACCP93_14605) pilC 3382345..3383604 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ACCP93_RS14610 (ACCP93_14610) - 3383611..3384474 (+) 864 WP_003491180.1 A24 family peptidase -
  ACCP93_RS14615 (ACCP93_14615) coaE 3384488..3385096 (+) 609 WP_078517255.1 dephospho-CoA kinase -
  ACCP93_RS14620 (ACCP93_14620) - 3385857..3386965 (+) 1109 WP_087944180.1 IS3-like element ISXca2 family transposase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14513.65 Da        Isoelectric Point: 8.4798

>NTDB_id=1038913 ACCP93_RS14600 WP_005921364.1 3381572..3382000(-) (comP) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1038913 ACCP93_RS14600 WP_005921364.1 3381572..3382000(-) (comP) [Xanthomonas campestris pv. fici strain NCPPB 2372]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.305

100

0.577
  pilA2 Legionella pneumophila str. Paris

55.319

99.296

0.549
  pilA2 Legionella pneumophila strain ERS1305867

54.61

99.296

0.542
  pilA Ralstonia pseudosolanacearum GMI1000

41.463

100

0.479
  pilA Pseudomonas aeruginosa PAK

37.58

100

0.415
  pilA/pilA1 Eikenella corrodens VA1

38.411

100

0.408
  pilE Neisseria gonorrhoeae strain FA1090

34.94

100

0.408
  pilA/pilAII Pseudomonas stutzeri DSM 10701

40.278

100

0.408
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.559

100

0.408
  pilA Haemophilus influenzae 86-028NP

38.971

95.775

0.373
  pilA Vibrio parahaemolyticus RIMD 2210633

40.31

90.845

0.366

Multiple sequence alignment