Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCP93_RS14580 Genome accession   NZ_CP167216
Coordinates   3377219..3378673 (+) Length   484 a.a.
NCBI ID   WP_218558977.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3372219..3383673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS14560 (ACCP93_14560) - 3372521..3372865 (-) 345 WP_008577787.1 ribbon-helix-helix domain-containing protein -
  ACCP93_RS14565 (ACCP93_14565) sucD 3373036..3373911 (-) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCP93_RS14570 (ACCP93_14570) sucC 3373936..3375105 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP93_RS14575 (ACCP93_14575) - 3375337..3376950 (+) 1614 WP_218558976.1 PAS domain-containing sensor histidine kinase -
  ACCP93_RS14580 (ACCP93_14580) pilR 3377219..3378673 (+) 1455 WP_218558977.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP93_RS14585 (ACCP93_14585) pilB 3378887..3379006 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP93_RS14590 (ACCP93_14590) pilB 3379284..3381020 (-) 1737 WP_218558981.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP93_RS14595 (ACCP93_14595) pilA2 3381062..3381475 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCP93_RS14600 (ACCP93_14600) comP 3381572..3382000 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCP93_RS14605 (ACCP93_14605) pilC 3382345..3383604 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52476.25 Da        Isoelectric Point: 6.8289

>NTDB_id=1038909 ACCP93_RS14580 WP_218558977.1 3377219..3378673(+) (pilR) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1038909 ACCP93_RS14580 WP_218558977.1 3377219..3378673(+) (pilR) [Xanthomonas campestris pv. fici strain NCPPB 2372]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGTGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGACGCCTTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGGTTGGCAGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment