Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   ACCP93_RS14595 Genome accession   NZ_CP167216
Coordinates   3381062..3381475 (-) Length   137 a.a.
NCBI ID   WP_005921365.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3376062..3386475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS14580 (ACCP93_14580) pilR 3377219..3378673 (+) 1455 WP_218558977.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP93_RS14585 (ACCP93_14585) pilB 3378887..3379006 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP93_RS14590 (ACCP93_14590) pilB 3379284..3381020 (-) 1737 WP_218558981.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP93_RS14595 (ACCP93_14595) pilA2 3381062..3381475 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCP93_RS14600 (ACCP93_14600) comP 3381572..3382000 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCP93_RS14605 (ACCP93_14605) pilC 3382345..3383604 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene
  ACCP93_RS14610 (ACCP93_14610) - 3383611..3384474 (+) 864 WP_003491180.1 A24 family peptidase -
  ACCP93_RS14615 (ACCP93_14615) coaE 3384488..3385096 (+) 609 WP_078517255.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14164.27 Da        Isoelectric Point: 8.1169

>NTDB_id=1038912 ACCP93_RS14595 WP_005921365.1 3381062..3381475(-) (pilA2) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MSRVNGFTLLELMIVVAIVGILSALALPAYQSYVIKARVTEAIILADSAKAAVTQNVNNENALTTTACAGVSGLSSPTKN
VASFTCQGAGVLTVVTTNVAGSVTLSLVPSYNSDRPVIWTCRHVSGSASYVPSDCRN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=1038912 ACCP93_RS14595 WP_005921365.1 3381062..3381475(-) (pilA2) [Xanthomonas campestris pv. fici strain NCPPB 2372]
ATGAGCCGGGTAAACGGTTTCACCTTGCTCGAGCTAATGATCGTCGTGGCCATCGTCGGGATATTGTCTGCATTGGCCCT
GCCGGCTTATCAAAGTTATGTAATCAAGGCGCGCGTGACCGAAGCTATTATTTTGGCTGACTCTGCCAAAGCTGCGGTGA
CTCAGAATGTCAATAATGAAAATGCTTTGACAACTACTGCATGTGCGGGGGTGAGCGGGCTGTCGTCTCCCACTAAAAAT
GTAGCGTCTTTCACGTGCCAGGGCGCAGGAGTGCTGACTGTCGTTACGACCAACGTTGCAGGCTCGGTAACTCTGTCACT
TGTACCCAGCTACAACTCGGATCGTCCGGTAATCTGGACTTGCCGACATGTTTCTGGATCGGCTAGTTACGTGCCTTCAG
ATTGCCGAAATTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(36-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

49.265

99.27

0.489
  pilA Ralstonia pseudosolanacearum GMI1000

41.875

100

0.489
  pilA2 Legionella pneumophila strain ERS1305867

48.529

99.27

0.482
  comP Acinetobacter baylyi ADP1

41.611

100

0.453

Multiple sequence alignment