Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   ACCP93_RS14585 Genome accession   NZ_CP167216
Coordinates   3378887..3379006 (-) Length   39 a.a.
NCBI ID   WP_136732873.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3373887..3384006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS14570 (ACCP93_14570) sucC 3373936..3375105 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP93_RS14575 (ACCP93_14575) - 3375337..3376950 (+) 1614 WP_218558976.1 PAS domain-containing sensor histidine kinase -
  ACCP93_RS14580 (ACCP93_14580) pilR 3377219..3378673 (+) 1455 WP_218558977.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP93_RS14585 (ACCP93_14585) pilB 3378887..3379006 (-) 120 WP_136732873.1 pilus assembly protein Machinery gene
  ACCP93_RS14590 (ACCP93_14590) pilB 3379284..3381020 (-) 1737 WP_218558981.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP93_RS14595 (ACCP93_14595) pilA2 3381062..3381475 (-) 414 WP_005921365.1 pilin Machinery gene
  ACCP93_RS14600 (ACCP93_14600) comP 3381572..3382000 (-) 429 WP_005921364.1 pilin Machinery gene
  ACCP93_RS14605 (ACCP93_14605) pilC 3382345..3383604 (+) 1260 WP_033836749.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4166.87 Da        Isoelectric Point: 11.0375

>NTDB_id=1038910 ACCP93_RS14585 WP_136732873.1 3378887..3379006(-) (pilB) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MKIASATQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=1038910 ACCP93_RS14585 WP_136732873.1 3378887..3379006(-) (pilB) [Xanthomonas campestris pv. fici strain NCPPB 2372]
ATGAAGATCGCCAGCGCCACGCAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCCTTGATGAAGGCTGCCCACGGGGT
GACCAGCCTGGCCGAGATCAATCGGGTGACCAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Acinetobacter baylyi ADP1

48.718

100

0.487

Multiple sequence alignment