Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   LQ179_RS20020 Genome accession   NZ_OW967003
Coordinates   4170011..4171231 (+) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli isolate 624     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 4165011..4176231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ179_RS20005 (AI2834V1_3858) rfbA 4165154..4166032 (+) 879 WP_001556223.1 glucose-1-phosphate thymidylyltransferase RfbA -
  LQ179_RS20010 (AI2834V1_3859) rfbC 4166098..4166649 (+) 552 WP_139496062.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  LQ179_RS20015 (AI2834V1_3860) - 4166699..4168846 (+) 2148 WP_230138840.1 capsular polysaccharide biosynthesis protein -
  LQ179_RS20020 (AI2834V1_3861) kpsS 4170011..4171231 (+) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  LQ179_RS20025 (AI2834V1_3862) - 4171257..4171487 (-) 231 Protein_3930 hypothetical protein -
  LQ179_RS20030 - 4171593..4171769 (-) 177 WP_000839288.1 DUF957 domain-containing protein -
  LQ179_RS20035 (AI2834V1_3863) - 4171786..4172153 (-) 368 Protein_3932 DUF5983 family protein -
  LQ179_RS20040 (AI2834V1_3864) cbtA 4172213..4172590 (-) 378 WP_230138841.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  LQ179_RS20045 (AI2834V1_3865) cbeA 4172679..4173032 (-) 354 WP_230138842.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  LQ179_RS20050 (AI2834V1_3866) - 4173106..4173327 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  LQ179_RS20055 (AI2834V1_3867) radC 4173390..4173866 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  LQ179_RS20060 (AI2834V1_3868) - 4173882..4174367 (-) 486 WP_230138843.1 antirestriction protein -
  LQ179_RS20065 (AI2834V1_3869) - 4174459..4175280 (-) 822 WP_230138844.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=1036487 LQ179_RS20020 WP_000794251.1 4170011..4171231(+) (kpsS) [Escherichia coli isolate 624]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1036487 LQ179_RS20020 WP_000794251.1 4170011..4171231(+) (kpsS) [Escherichia coli isolate 624]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGGGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGCCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAACGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment