Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   AB6N02_RS19205 Genome accession   NZ_CP163510
Coordinates   4077283..4077450 (-) Length   55 a.a.
NCBI ID   WP_369325368.1    Uniprot ID   -
Organism   Aeromonas caviae strain 103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4072283..4082450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6N02_RS19185 (AB6N02_19185) - 4072984..4073856 (-) 873 WP_029314124.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  AB6N02_RS19190 (AB6N02_19190) - 4073927..4075483 (-) 1557 WP_052814887.1 SPOR domain-containing protein -
  AB6N02_RS19195 (AB6N02_19195) aroB 4075473..4076555 (-) 1083 WP_039039582.1 3-dehydroquinate synthase -
  AB6N02_RS19200 (AB6N02_19200) aroK 4076573..4077091 (-) 519 WP_010673824.1 shikimate kinase AroK -
  AB6N02_RS19205 (AB6N02_19205) comQ 4077283..4077450 (-) 168 WP_369325368.1 hypothetical protein Machinery gene
  AB6N02_RS19210 (AB6N02_19210) - 4077642..4079726 (-) 2085 WP_369325369.1 type IV pilus secretin PilQ -
  AB6N02_RS19215 (AB6N02_19215) - 4079743..4080270 (-) 528 WP_029314119.1 pilus assembly protein PilP -
  AB6N02_RS19220 (AB6N02_19220) tapO 4080273..4080869 (-) 597 WP_041212566.1 PilO family type IV pilus biogenesis protein TapO -
  AB6N02_RS19225 (AB6N02_19225) tapN 4080866..4081435 (-) 570 WP_039039579.1 PilN family type IV pilus biogenesis protein TapN -

Sequence

Protein


Download         Length: 55 a.a.        Molecular weight: 6107.25 Da        Isoelectric Point: 10.0989

>NTDB_id=1030230 AB6N02_RS19205 WP_369325368.1 4077283..4077450(-) (comQ) [Aeromonas caviae strain 103]
MLGGIYQQTIKSDVSKVPLLGDIPGLGYLFKKTTSENKKRELLIFVTPRIVTDAL

Nucleotide


Download         Length: 168 bp        

>NTDB_id=1030230 AB6N02_RS19205 WP_369325368.1 4077283..4077450(-) (comQ) [Aeromonas caviae strain 103]
GTGCTTGGCGGCATCTATCAACAGACCATCAAGAGTGATGTCAGCAAGGTGCCGCTGCTGGGGGATATCCCCGGGTTGGG
CTATCTGTTCAAGAAAACCACCAGTGAAAACAAGAAGCGTGAACTGCTGATCTTCGTGACCCCGAGGATAGTGACCGACG
CCCTCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(1-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Acinetobacter baylyi ADP1

58.182

100

0.582
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

58.824

92.727

0.545
  pilQ Vibrio cholerae strain A1552

58.824

92.727

0.545
  pilQ Acinetobacter baumannii D1279779

54.545

100

0.545
  pilQ Acinetobacter baumannii strain A118

54.545

100

0.545
  pilQ Vibrio campbellii strain DS40M4

56.863

92.727

0.527
  pilQ Neisseria meningitidis MC58

51.852

98.182

0.509
  pilQ Neisseria meningitidis M1080

51.852

98.182

0.509
  pilQ Neisseria gonorrhoeae strain FA1090

51.852

98.182

0.509
  comE Haemophilus influenzae Rd KW20

52.941

92.727

0.491
  comE Glaesserella parasuis strain SC1401

52.941

92.727

0.491
  comE Haemophilus influenzae 86-028NP

52.941

92.727

0.491
  pilQ Legionella pneumophila strain Lp02

45.455

100

0.455
  pilQ Legionella pneumophila strain ERS1305867

45.455

100

0.455
  pilQ Thermus thermophilus HB27

42.593

98.182

0.418
  pilQ Pseudomonas aeruginosa PAK

43.396

96.364

0.418
  pilQ Synechocystis sp. PCC 6803

40.741

98.182

0.4

Multiple sequence alignment