Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   AB0763_RS11555 Genome accession   NZ_CP162601
Coordinates   2626700..2627722 (-) Length   340 a.a.
NCBI ID   WP_306100537.1    Uniprot ID   A0AB39HF88
Organism   Vibrio sp. HB236076     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2621700..2632722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0763_RS11525 (AB0763_11525) - 2622324..2622821 (+) 498 WP_306100542.1 SprT family zinc-dependent metalloprotease -
  AB0763_RS11530 (AB0763_11530) - 2622892..2623617 (+) 726 WP_306100541.1 endonuclease -
  AB0763_RS11535 (AB0763_11535) rsmE 2623716..2624447 (+) 732 WP_306100540.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  AB0763_RS11540 (AB0763_11540) gshB 2624460..2625407 (+) 948 WP_306100539.1 glutathione synthase -
  AB0763_RS11545 (AB0763_11545) - 2625469..2626032 (+) 564 WP_306100600.1 YqgE/AlgH family protein -
  AB0763_RS11550 (AB0763_11550) ruvX 2626082..2626504 (+) 423 WP_306100538.1 Holliday junction resolvase RuvX -
  AB0763_RS11555 (AB0763_11555) pilT 2626700..2627722 (-) 1023 WP_306100537.1 type IV pilus twitching motility protein PilT Machinery gene
  AB0763_RS11560 (AB0763_11560) - 2627746..2628447 (+) 702 WP_306100536.1 YggS family pyridoxal phosphate-dependent enzyme -
  AB0763_RS11565 (AB0763_11565) proC 2628492..2629310 (+) 819 WP_306100535.1 pyrroline-5-carboxylate reductase -
  AB0763_RS11570 (AB0763_11570) - 2629350..2629901 (+) 552 WP_306100534.1 YggT family protein -
  AB0763_RS11575 (AB0763_11575) - 2630099..2630701 (+) 603 WP_306100533.1 XTP/dITP diphosphatase -
  AB0763_RS11580 (AB0763_11580) hemW 2630703..2631863 (+) 1161 WP_306100599.1 radical SAM family heme chaperone HemW -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 37986.45 Da        Isoelectric Point: 6.8947

>NTDB_id=1027411 AB0763_RS11555 WP_306100537.1 2626700..2627722(-) (pilT) [Vibrio sp. HB236076]
MNFTELLRSSVNQNASDVHFSSGEPVRVRLNGQLTILEDKVWQSQDLAVLSQSLFSQEQQRQLVEQKELDTIYHQAELGR
FRVNAFYQQRGLSIVLRCIADSIPKLCQLNAPSAIAQMTRAQQGLILVTGPTGSGKSTTLAAMVDDINRTQQKHIITIED
PIEFIHHSQQSLISQRQLQRDTLGFTAALRAALREDPDVILVGELRDKRSIQLALTAAETGHLVLATLHTRSACQAVTRI
VDVFDQEEKSMIRVQLSESLKGVVAQRLLNSTQQKRVACYEVLMATSAIRNLIREGKVNQMYSMMQTGRECGMQTLEQSV
AQHIEQGILPPEALKALDCD

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=1027411 AB0763_RS11555 WP_306100537.1 2626700..2627722(-) (pilT) [Vibrio sp. HB236076]
ATGAATTTCACCGAGTTACTGAGAAGCAGTGTAAATCAAAACGCCTCGGATGTGCACTTTTCTAGTGGTGAGCCCGTTCG
AGTGCGTCTCAACGGGCAATTGACTATCTTAGAGGATAAAGTGTGGCAGTCACAAGACTTGGCGGTATTGAGTCAAAGCC
TTTTTAGCCAAGAACAACAACGCCAACTGGTCGAACAAAAAGAGTTAGATACGATTTATCACCAGGCCGAACTAGGGAGG
TTTCGCGTCAATGCTTTTTACCAGCAGAGGGGGTTATCGATCGTATTAAGGTGCATTGCCGATTCGATTCCCAAACTCTG
TCAGCTCAATGCACCCAGTGCGATAGCCCAAATGACAAGGGCACAGCAAGGCTTGATTTTGGTTACTGGGCCGACCGGAT
CTGGCAAGTCGACGACATTAGCGGCTATGGTTGATGACATTAACCGCACACAACAAAAACACATTATTACGATTGAGGAT
CCTATCGAGTTTATTCACCACTCGCAGCAAAGCTTAATTTCGCAGCGACAATTGCAACGAGATACGTTAGGTTTCACCGC
GGCGTTAAGGGCAGCATTACGAGAAGACCCCGATGTTATCCTCGTCGGAGAGTTGCGCGATAAGCGCAGCATTCAGTTAG
CGCTAACCGCGGCTGAAACCGGGCACTTGGTGTTGGCAACATTGCATACTCGCTCTGCCTGCCAAGCCGTGACTCGTATT
GTCGATGTCTTTGATCAAGAAGAAAAGTCCATGATCCGAGTTCAGTTATCGGAGTCACTTAAGGGCGTTGTGGCTCAACG
CTTGCTCAATAGTACCCAGCAGAAAAGAGTGGCGTGTTATGAAGTGCTGATGGCGACATCGGCCATTCGCAATTTGATCC
GCGAAGGGAAAGTGAACCAAATGTATTCGATGATGCAAACCGGGCGAGAGTGTGGAATGCAAACGCTTGAGCAAAGTGTG
GCTCAGCATATCGAGCAAGGAATATTGCCCCCTGAGGCGTTGAAAGCGTTGGATTGTGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

53.495

96.765

0.518
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

53.495

96.765

0.518
  pilT Legionella pneumophila strain ERS1305867

50.456

96.765

0.488
  pilT Legionella pneumophila strain Lp02

50.456

96.765

0.488
  pilT Pseudomonas stutzeri DSM 10701

49.254

98.529

0.485
  pilT Acinetobacter baylyi ADP1

50.152

96.765

0.485
  pilT Neisseria meningitidis 8013

48.649

97.941

0.476
  pilT Neisseria gonorrhoeae MS11

48.214

98.824

0.476
  pilT Acinetobacter nosocomialis M2

48.494

97.647

0.474
  pilT Acinetobacter baumannii D1279779

48.494

97.647

0.474
  pilT Acinetobacter baumannii strain A118

48.494

97.647

0.474
  pilT Pseudomonas aeruginosa PAK

48.494

97.647

0.474
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.584

94.706

0.441
  pilU Acinetobacter baylyi ADP1

37.135

100

0.374
  pilU Pseudomonas stutzeri DSM 10701

37.805

96.471

0.365

Multiple sequence alignment