Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   AB1F57_RS00605 Genome accession   NZ_CP162268
Coordinates   103646..104596 (+) Length   316 a.a.
NCBI ID   WP_170239295.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 98646..109596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS00585 (AB1F57_00585) - 99235..100491 (-) 1257 WP_174853283.1 ISL3 family transposase -
  AB1F57_RS00590 (AB1F57_00590) - 100822..102078 (-) 1257 WP_172022804.1 ISL3 family transposase -
  AB1F57_RS00595 (AB1F57_00595) comX/sigX 102597..103067 (+) 471 WP_105137563.1 transcriptional regulator Regulator
  AB1F57_RS00600 (AB1F57_00600) - 103198..103551 (+) 354 WP_170239296.1 DUF1033 family protein -
  AB1F57_RS00605 (AB1F57_00605) comYA 103646..104596 (+) 951 WP_170239295.1 competence type IV pilus ATPase ComGA Machinery gene
  AB1F57_RS00610 (AB1F57_00610) comYB 104508..105545 (+) 1038 WP_367986322.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB1F57_RS00615 (AB1F57_00615) comYC 105546..105842 (+) 297 WP_105137567.1 competence type IV pilus major pilin ComGC Machinery gene
  AB1F57_RS00620 (AB1F57_00620) comGD/cglD 105808..106233 (+) 426 WP_170239294.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB1F57_RS00625 (AB1F57_00625) comYE 106205..106498 (+) 294 WP_367985900.1 competence type IV pilus minor pilin ComGE Machinery gene
  AB1F57_RS00630 (AB1F57_00630) comYF 106485..106919 (+) 435 WP_170239292.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB1F57_RS00635 (AB1F57_00635) comGG 106897..107499 (+) 603 WP_167785080.1 competence type IV pilus minor pilin ComGG -
  AB1F57_RS00640 (AB1F57_00640) comYH 107550..108503 (+) 954 WP_367985901.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35450.38 Da        Isoelectric Point: 5.1589

>NTDB_id=1024675 AB1F57_RS00605 WP_170239295.1 103646..104596(+) (comYA) [Streptococcus sp. ZY1909104]
MIQEKAKQMIEEAVTGRVSDIYLVPKGETYQLYYRIMDEREFVRELEETEVDALIGHFKFLAGLNVGEKRRSQQGSCDYD
YGKGEISLRLSTVGDYRGKESLVIRLLYDNDKELKFWFQAVEEIAKEIKGRGLYLFSGPVGSGKTTLMYHLARMKFPDKQ
ILTIEDPVEIKQDDMLQLQLNETIGATYDNLIKLSLRHRPDLLIIGEIRDAETARSVIRASLTGATVFSTVHAKSISGVY
ARMLELGVSPEELNNALQGIAYQRLIGGGGVVDFAREDFQNHSADQWNAQIDSLLAAGHISPRQAEAEKIILGASA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1024675 AB1F57_RS00605 WP_170239295.1 103646..104596(+) (comYA) [Streptococcus sp. ZY1909104]
ATGATTCAAGAAAAAGCAAAACAAATGATAGAGGAGGCGGTAACCGGTCGAGTCAGTGACATTTATCTGGTTCCCAAAGG
TGAGACATATCAGCTCTATTATCGTATCATGGACGAACGGGAATTTGTCCGAGAGCTGGAGGAAACGGAAGTAGACGCTC
TGATTGGGCATTTCAAGTTTCTAGCTGGTCTCAATGTCGGTGAGAAGCGCCGTAGTCAGCAGGGGTCCTGCGATTATGAT
TATGGCAAAGGCGAGATTTCTCTGCGTCTGTCGACGGTCGGGGATTATCGTGGCAAGGAAAGTTTGGTCATCCGACTGCT
CTATGATAATGACAAGGAGTTGAAATTCTGGTTTCAGGCAGTAGAGGAAATTGCCAAGGAAATCAAAGGTCGTGGGCTCT
ACCTTTTTTCGGGTCCAGTCGGCTCTGGCAAGACCACGCTTATGTACCATTTAGCCAGGATGAAATTCCCAGACAAGCAA
ATTTTGACCATCGAAGATCCGGTGGAAATCAAGCAGGACGATATGTTGCAACTTCAGCTCAATGAAACTATTGGCGCGAC
TTATGACAATCTCATCAAACTGTCCCTGCGCCATCGTCCTGACCTGCTTATCATCGGGGAAATCCGTGATGCAGAGACAG
CTCGATCAGTTATTAGGGCCAGTTTGACCGGAGCGACAGTCTTTTCGACGGTGCATGCCAAGTCCATTTCGGGTGTCTAT
GCTCGGATGTTGGAATTGGGTGTTAGTCCAGAAGAGCTCAATAATGCCCTGCAAGGTATTGCCTACCAGCGCTTGATAGG
GGGAGGAGGTGTTGTTGATTTTGCCAGAGAAGATTTCCAAAACCATTCCGCAGACCAGTGGAATGCACAGATTGATAGCC
TTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAGGCCGAAAAAATTATCCTTGGAGCGTCAGCGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

68.387

98.101

0.671
  comYA Streptococcus mutans UA159

67.524

98.418

0.665
  comYA Streptococcus mutans UA140

67.524

98.418

0.665
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

66.129

98.101

0.649
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

66.129

98.101

0.649
  comGA/cglA/cilD Streptococcus pneumoniae R6

66.129

98.101

0.649
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

66.129

98.101

0.649
  comGA/cglA/cilD Streptococcus pneumoniae D39

66.129

98.101

0.649
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

65.806

98.101

0.646
  comGA Lactococcus lactis subsp. cremoris KW2

52.681

100

0.528

Multiple sequence alignment