Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   AB1F57_RS00610 Genome accession   NZ_CP162268
Coordinates   104508..105545 (+) Length   345 a.a.
NCBI ID   WP_367986322.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 99508..110545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS00590 (AB1F57_00590) - 100822..102078 (-) 1257 WP_172022804.1 ISL3 family transposase -
  AB1F57_RS00595 (AB1F57_00595) comX/sigX 102597..103067 (+) 471 WP_105137563.1 transcriptional regulator Regulator
  AB1F57_RS00600 (AB1F57_00600) - 103198..103551 (+) 354 WP_170239296.1 DUF1033 family protein -
  AB1F57_RS00605 (AB1F57_00605) comYA 103646..104596 (+) 951 WP_170239295.1 competence type IV pilus ATPase ComGA Machinery gene
  AB1F57_RS00610 (AB1F57_00610) comYB 104508..105545 (+) 1038 WP_367986322.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB1F57_RS00615 (AB1F57_00615) comYC 105546..105842 (+) 297 WP_105137567.1 competence type IV pilus major pilin ComGC Machinery gene
  AB1F57_RS00620 (AB1F57_00620) comGD/cglD 105808..106233 (+) 426 WP_170239294.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB1F57_RS00625 (AB1F57_00625) comYE 106205..106498 (+) 294 WP_367985900.1 competence type IV pilus minor pilin ComGE Machinery gene
  AB1F57_RS00630 (AB1F57_00630) comYF 106485..106919 (+) 435 WP_170239292.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB1F57_RS00635 (AB1F57_00635) comGG 106897..107499 (+) 603 WP_167785080.1 competence type IV pilus minor pilin ComGG -
  AB1F57_RS00640 (AB1F57_00640) comYH 107550..108503 (+) 954 WP_367985901.1 class I SAM-dependent methyltransferase Machinery gene
  AB1F57_RS00645 (AB1F57_00645) - 108552..109739 (+) 1188 WP_367985902.1 acetate kinase -
  AB1F57_RS00650 (AB1F57_00650) - 109994..110545 (+) 552 WP_105137573.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39268.17 Da        Isoelectric Point: 8.7814

>NTDB_id=1024676 AB1F57_RS00610 WP_367986322.1 104508..105545(+) (comYB) [Streptococcus sp. ZY1909104]
MHRLIAFLQQDISVLGRQRPKKLSLERQRKVIELFNNLFASGFHLGEIVDFLRRSQLLADQYTQILSDGLVAGKPFSSLL
ADLAFSDTVVTQVSLAEIHGNTSLSLQHIETYLSNLSKVRKKLIEVGTYPVILLGFLVLIMLALKNYLLPQLEEGNAATM
LINHLPTIFLGLVLTILLCTLAGYIWYRRTAKITVFSRLSALPFFGKLIQTYLTAYYAREWGSLIGQGLDMQQVVRLMQE
QQSQLFIEIGRDMADALGNGQSFDQHIRSYPFFKRELSLIVEYGQVKSKLGSELAVYANECWEEFFSRVNRAMQLIQPLV
FLFVALVVVLIYAAMLLPIYQNMEM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1024676 AB1F57_RS00610 WP_367986322.1 104508..105545(+) (comYB) [Streptococcus sp. ZY1909104]
ATGCACAGATTGATAGCCTTCTTGCAGCAGGACATATCAGTCCTCGGCAGGCAGAGGCCGAAAAAATTATCCTTGGAGCG
TCAGCGTAAAGTCATCGAGCTTTTTAACAATCTCTTTGCCAGTGGCTTTCACTTGGGAGAGATTGTTGATTTTCTCAGGC
GCAGTCAGCTCTTGGCAGACCAATATACGCAAATCCTATCAGACGGTCTGGTAGCGGGGAAGCCTTTTTCGAGCCTTTTA
GCTGATTTGGCCTTTTCCGACACAGTTGTCACTCAGGTGTCATTGGCAGAAATTCATGGCAATACCAGTCTCAGTCTGCA
ACACATCGAGACCTATCTAAGTAACTTATCCAAAGTACGGAAAAAATTGATTGAGGTGGGGACCTATCCCGTTATTCTAT
TAGGATTTTTGGTGTTGATTATGCTGGCTCTGAAAAACTATCTCCTGCCACAGTTGGAGGAGGGTAATGCCGCGACCATG
CTCATCAACCATTTACCGACCATCTTTCTCGGGTTGGTTTTAACCATCTTGCTCTGCACTTTAGCAGGCTACATCTGGTA
CCGCAGGACGGCTAAAATCACTGTCTTTAGTCGTCTGTCCGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CCGCCTACTACGCGCGGGAGTGGGGTAGCCTCATCGGGCAAGGATTGGATATGCAACAGGTGGTTCGGCTGATGCAGGAG
CAGCAGTCCCAGCTCTTTATCGAGATTGGGCGAGATATGGCGGATGCTTTGGGCAATGGGCAGAGCTTTGACCAGCATAT
CCGTTCCTATCCATTTTTCAAGAGGGAACTGAGTTTGATTGTGGAGTACGGGCAAGTCAAGTCCAAGTTGGGTAGCGAGC
TTGCCGTCTATGCCAATGAGTGTTGGGAGGAATTTTTCTCTCGCGTTAATCGTGCCATGCAGCTCATTCAACCGCTGGTC
TTTCTCTTTGTCGCTCTCGTTGTTGTTCTTATCTACGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

60.299

97.101

0.586
  comYB Streptococcus mutans UA140

58.772

99.13

0.583
  comYB Streptococcus mutans UA159

58.772

99.13

0.583
  comGB/cglB Streptococcus mitis SK321

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae D39

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae Rx1

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae R6

59.104

97.101

0.574
  comGB/cglB Streptococcus pneumoniae TIGR4

59.104

97.101

0.574
  comGB Lactococcus lactis subsp. cremoris KW2

49.852

97.681

0.487

Multiple sequence alignment