Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   AB1F57_RS00625 Genome accession   NZ_CP162268
Coordinates   106205..106498 (+) Length   97 a.a.
NCBI ID   WP_367985900.1    Uniprot ID   -
Organism   Streptococcus sp. ZY1909104     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101205..111498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1F57_RS00595 (AB1F57_00595) comX/sigX 102597..103067 (+) 471 WP_105137563.1 transcriptional regulator Regulator
  AB1F57_RS00600 (AB1F57_00600) - 103198..103551 (+) 354 WP_170239296.1 DUF1033 family protein -
  AB1F57_RS00605 (AB1F57_00605) comYA 103646..104596 (+) 951 WP_170239295.1 competence type IV pilus ATPase ComGA Machinery gene
  AB1F57_RS00610 (AB1F57_00610) comYB 104508..105545 (+) 1038 WP_367986322.1 competence type IV pilus assembly protein ComGB Machinery gene
  AB1F57_RS00615 (AB1F57_00615) comYC 105546..105842 (+) 297 WP_105137567.1 competence type IV pilus major pilin ComGC Machinery gene
  AB1F57_RS00620 (AB1F57_00620) comGD/cglD 105808..106233 (+) 426 WP_170239294.1 competence type IV pilus minor pilin ComGD Machinery gene
  AB1F57_RS00625 (AB1F57_00625) comYE 106205..106498 (+) 294 WP_367985900.1 competence type IV pilus minor pilin ComGE Machinery gene
  AB1F57_RS00630 (AB1F57_00630) comYF 106485..106919 (+) 435 WP_170239292.1 competence type IV pilus minor pilin ComGF Machinery gene
  AB1F57_RS00635 (AB1F57_00635) comGG 106897..107499 (+) 603 WP_167785080.1 competence type IV pilus minor pilin ComGG -
  AB1F57_RS00640 (AB1F57_00640) comYH 107550..108503 (+) 954 WP_367985901.1 class I SAM-dependent methyltransferase Machinery gene
  AB1F57_RS00645 (AB1F57_00645) - 108552..109739 (+) 1188 WP_367985902.1 acetate kinase -
  AB1F57_RS00650 (AB1F57_00650) - 109994..110545 (+) 552 WP_105137573.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10857.70 Da        Isoelectric Point: 10.2225

>NTDB_id=1024679 AB1F57_RS00625 WP_367985900.1 106205..106498(+) (comYE) [Streptococcus sp. ZY1909104]
MVVIRNRKNKAYILLEGLVALSVLVTITSLFLSAMEVSRRQQAEGLYQQEVLNVAKMAVQMGQDNLSLNGVKVTVQRSDK
VLAVYHEGREVARVEKN

Nucleotide


Download         Length: 294 bp        

>NTDB_id=1024679 AB1F57_RS00625 WP_367985900.1 106205..106498(+) (comYE) [Streptococcus sp. ZY1909104]
GTGGTCGTTATAAGAAATCGGAAAAATAAGGCCTATATCTTGCTGGAGGGGCTGGTGGCCTTGTCGGTTCTAGTCACTAT
TACCAGCCTCTTTCTTTCGGCCATGGAGGTCAGTCGCAGACAACAGGCGGAGGGCTTGTATCAACAGGAGGTCCTCAATG
TTGCCAAGATGGCGGTGCAGATGGGTCAGGATAATCTGTCTCTCAATGGTGTCAAGGTAACGGTCCAGCGGTCGGACAAG
GTTTTGGCTGTCTATCATGAGGGAAGAGAGGTGGCGCGTGTTGAGAAAAACTAG

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

48.958

98.969

0.485
  comYE Streptococcus mutans UA159

48.958

98.969

0.485
  comGE/cglE Streptococcus pneumoniae Rx1

45.783

85.567

0.392
  comGE/cglE Streptococcus pneumoniae D39

45.783

85.567

0.392
  comGE/cglE Streptococcus pneumoniae R6

45.783

85.567

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

45.783

85.567

0.392
  comGE/cglE Streptococcus mitis NCTC 12261

43.373

85.567

0.371
  comGE/cglE Streptococcus mitis SK321

43.373

85.567

0.371

Multiple sequence alignment