Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | AB1F57_RS00640 | Genome accession | NZ_CP162268 |
| Coordinates | 107550..108503 (+) | Length | 317 a.a. |
| NCBI ID | WP_367985901.1 | Uniprot ID | - |
| Organism | Streptococcus sp. ZY1909104 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 102550..113503
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB1F57_RS00595 (AB1F57_00595) | comX/sigX | 102597..103067 (+) | 471 | WP_105137563.1 | transcriptional regulator | Regulator |
| AB1F57_RS00600 (AB1F57_00600) | - | 103198..103551 (+) | 354 | WP_170239296.1 | DUF1033 family protein | - |
| AB1F57_RS00605 (AB1F57_00605) | comYA | 103646..104596 (+) | 951 | WP_170239295.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB1F57_RS00610 (AB1F57_00610) | comYB | 104508..105545 (+) | 1038 | WP_367986322.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AB1F57_RS00615 (AB1F57_00615) | comYC | 105546..105842 (+) | 297 | WP_105137567.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB1F57_RS00620 (AB1F57_00620) | comGD/cglD | 105808..106233 (+) | 426 | WP_170239294.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| AB1F57_RS00625 (AB1F57_00625) | comYE | 106205..106498 (+) | 294 | WP_367985900.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| AB1F57_RS00630 (AB1F57_00630) | comYF | 106485..106919 (+) | 435 | WP_170239292.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| AB1F57_RS00635 (AB1F57_00635) | comGG | 106897..107499 (+) | 603 | WP_167785080.1 | competence type IV pilus minor pilin ComGG | - |
| AB1F57_RS00640 (AB1F57_00640) | comYH | 107550..108503 (+) | 954 | WP_367985901.1 | class I SAM-dependent methyltransferase | Machinery gene |
| AB1F57_RS00645 (AB1F57_00645) | - | 108552..109739 (+) | 1188 | WP_367985902.1 | acetate kinase | - |
| AB1F57_RS00650 (AB1F57_00650) | - | 109994..110545 (+) | 552 | WP_105137573.1 | folate family ECF transporter S component | - |
| AB1F57_RS00655 (AB1F57_00655) | - | 110600..111862 (+) | 1263 | WP_105137574.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| AB1F57_RS00660 (AB1F57_00660) | - | 112089..112475 (-) | 387 | WP_167785083.1 | DUF6176 family protein | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35683.81 Da Isoelectric Point: 4.4183
>NTDB_id=1024681 AB1F57_RS00640 WP_367985901.1 107550..108503(+) (comYH) [Streptococcus sp. ZY1909104]
MNFENIEQAYDLLLENVQNIQNQLGTNIYDAMIEQNAAYMAGQHELETVVANNQTLKSLELTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVEQLVSTPEITVLEIGSGTGNLAQTILNASPKKLDYLGIEVDDLLIDLSASMADVMQAD
ISFAQGDAVRPQILKESQVIIADLPIGYYPDDQIASRYQVASSTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKNWLQDQANIVSMIALPPELFGKAAVAKSIFVLQKKTARQLVPFVYPLQSLKDKDVIQEFMVKFKNWKQGNAI
MNFENIEQAYDLLLENVQNIQNQLGTNIYDAMIEQNAAYMAGQHELETVVANNQTLKSLELTKEEWRRAFQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVEQLVSTPEITVLEIGSGTGNLAQTILNASPKKLDYLGIEVDDLLIDLSASMADVMQAD
ISFAQGDAVRPQILKESQVIIADLPIGYYPDDQIASRYQVASSTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKNWLQDQANIVSMIALPPELFGKAAVAKSIFVLQKKTARQLVPFVYPLQSLKDKDVIQEFMVKFKNWKQGNAI
Nucleotide
Download Length: 954 bp
>NTDB_id=1024681 AB1F57_RS00640 WP_367985901.1 107550..108503(+) (comYH) [Streptococcus sp. ZY1909104]
ATGAATTTTGAAAACATTGAGCAGGCCTACGACCTGCTGTTAGAAAACGTACAGAACATCCAAAACCAGCTGGGCACCAA
TATTTACGATGCCATGATTGAGCAAAATGCGGCTTATATGGCTGGTCAGCATGAGTTGGAAACTGTTGTGGCCAACAATC
AGACTTTGAAGAGCTTAGAATTGACCAAGGAGGAATGGCGCAGAGCTTTTCAATTCCTACTGATTAAGGCCAACCAGACT
GAGCCTATGCAGTACAATCATCAGTTTACACCAGACTCGATTGGCTTTATCCTGTCTTTCTTAGTAGAACAGTTGGTCAG
CACACCAGAAATCACGGTCTTGGAAATCGGTTCGGGGACGGGGAATTTGGCGCAGACTATTCTCAATGCTAGCCCCAAAA
AATTGGATTATCTGGGGATTGAAGTGGATGATCTCTTGATCGACTTGTCGGCCAGTATGGCAGATGTCATGCAGGCGGAC
ATTTCCTTTGCCCAGGGGGATGCGGTACGTCCGCAGATTCTCAAGGAAAGTCAGGTCATCATCGCAGATTTGCCGATTGG
TTATTATCCTGATGATCAGATTGCCAGTCGTTACCAGGTGGCCAGTTCGACCGAGCATACCTACGCTCATCATTTGCTGA
TGGAGCAGTCGCTCAAGTATCTGGAAAAGGATGGTTTTGCCATTCTTTTGGCTCCCAATGACCTTTTGACTAGTCCGCAA
AGTGATTTATTGAAAAATTGGTTGCAGGACCAAGCCAATATTGTTTCTATGATTGCCCTGCCGCCAGAACTCTTTGGTAA
GGCTGCTGTGGCTAAGTCGATTTTTGTTCTACAGAAAAAGACAGCTCGTCAACTGGTGCCTTTTGTTTATCCACTCCAAA
GTCTCAAAGACAAGGATGTTATCCAAGAATTTATGGTCAAATTCAAAAATTGGAAACAAGGGAATGCAATTTAG
ATGAATTTTGAAAACATTGAGCAGGCCTACGACCTGCTGTTAGAAAACGTACAGAACATCCAAAACCAGCTGGGCACCAA
TATTTACGATGCCATGATTGAGCAAAATGCGGCTTATATGGCTGGTCAGCATGAGTTGGAAACTGTTGTGGCCAACAATC
AGACTTTGAAGAGCTTAGAATTGACCAAGGAGGAATGGCGCAGAGCTTTTCAATTCCTACTGATTAAGGCCAACCAGACT
GAGCCTATGCAGTACAATCATCAGTTTACACCAGACTCGATTGGCTTTATCCTGTCTTTCTTAGTAGAACAGTTGGTCAG
CACACCAGAAATCACGGTCTTGGAAATCGGTTCGGGGACGGGGAATTTGGCGCAGACTATTCTCAATGCTAGCCCCAAAA
AATTGGATTATCTGGGGATTGAAGTGGATGATCTCTTGATCGACTTGTCGGCCAGTATGGCAGATGTCATGCAGGCGGAC
ATTTCCTTTGCCCAGGGGGATGCGGTACGTCCGCAGATTCTCAAGGAAAGTCAGGTCATCATCGCAGATTTGCCGATTGG
TTATTATCCTGATGATCAGATTGCCAGTCGTTACCAGGTGGCCAGTTCGACCGAGCATACCTACGCTCATCATTTGCTGA
TGGAGCAGTCGCTCAAGTATCTGGAAAAGGATGGTTTTGCCATTCTTTTGGCTCCCAATGACCTTTTGACTAGTCCGCAA
AGTGATTTATTGAAAAATTGGTTGCAGGACCAAGCCAATATTGTTTCTATGATTGCCCTGCCGCCAGAACTCTTTGGTAA
GGCTGCTGTGGCTAAGTCGATTTTTGTTCTACAGAAAAAGACAGCTCGTCAACTGGTGCCTTTTGTTTATCCACTCCAAA
GTCTCAAAGACAAGGATGTTATCCAAGAATTTATGGTCAAATTCAAAAATTGGAAACAAGGGAATGCAATTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
58.861 |
99.685 |
0.587 |
| comYH | Streptococcus mutans UA159 |
58.544 |
99.685 |
0.584 |