Detailed information NTG1024680

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: AB1F57_RS00630
• Genome accession: NZ_CP162268
• Coordinates: 106485..106919 (+)
• Length: 144 a.a.
• NCBI ID: WP_170239292.1
• Uniprot ID: -
• Organism: Streptococcus sp. ZY1909104
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 101485..111919

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB1F57_RS00595 (AB1F57_00595)	comX/sigX	102597..103067 (+)	471	WP_105137563.1	transcriptional regulator	Regulator
AB1F57_RS00600 (AB1F57_00600)	-	103198..103551 (+)	354	WP_170239296.1	DUF1033 family protein	-
AB1F57_RS00605 (AB1F57_00605)	comYA	103646..104596 (+)	951	WP_170239295.1	competence type IV pilus ATPase ComGA	Machinery gene
AB1F57_RS00610 (AB1F57_00610)	comYB	104508..105545 (+)	1038	WP_367986322.1	competence type IV pilus assembly protein ComGB	Machinery gene
AB1F57_RS00615 (AB1F57_00615)	comYC	105546..105842 (+)	297	WP_105137567.1	competence type IV pilus major pilin ComGC	Machinery gene
AB1F57_RS00620 (AB1F57_00620)	comGD/cglD	105808..106233 (+)	426	WP_170239294.1	competence type IV pilus minor pilin ComGD	Machinery gene
AB1F57_RS00625 (AB1F57_00625)	comYE	106205..106498 (+)	294	WP_367985900.1	competence type IV pilus minor pilin ComGE	Machinery gene
AB1F57_RS00630 (AB1F57_00630)	comYF	106485..106919 (+)	435	WP_170239292.1	competence type IV pilus minor pilin ComGF	Machinery gene
AB1F57_RS00635 (AB1F57_00635)	comGG	106897..107499 (+)	603	WP_167785080.1	competence type IV pilus minor pilin ComGG	-
AB1F57_RS00640 (AB1F57_00640)	comYH	107550..108503 (+)	954	WP_367985901.1	class I SAM-dependent methyltransferase	Machinery gene
AB1F57_RS00645 (AB1F57_00645)	-	108552..109739 (+)	1188	WP_367985902.1	acetate kinase	-
AB1F57_RS00650 (AB1F57_00650)	-	109994..110545 (+)	552	WP_105137573.1	folate family ECF transporter S component	-
AB1F57_RS00655 (AB1F57_00655)	-	110600..111862 (+)	1263	WP_105137574.1	folylpolyglutamate synthase/dihydrofolate synthase family protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16486.62 Da
• Isoelectric Point: 6.4665

>NTDB_id=1024680 AB1F57_RS00630 WP_170239292.1 106485..106919(+) (comYF) [Streptococcus sp. ZY1909104]
MRKTRCAAFTLLECLVALVIVSGSLLVFEGLSKLVVHEVRYQDQRVEKNWLLFCDQLRSEWEGASLDRVDAGRVYIRHDG
QALSFGKSRSDDFRKTNDRGQGYQPMLYGVKSASYSQSGQIVRLDVTFETGEERSFVYDFEEKG

Nucleotide

• Length: 435 bp

>NTDB_id=1024680 AB1F57_RS00630 WP_170239292.1 106485..106919(+) (comYF) [Streptococcus sp. ZY1909104]
TTGAGAAAAACTAGGTGTGCTGCCTTTACTCTTCTGGAATGTCTGGTGGCATTGGTCATCGTTTCAGGCAGTTTGCTGGT
CTTTGAGGGCTTGTCAAAATTGGTGGTCCACGAAGTTCGCTACCAGGACCAGCGTGTTGAGAAGAACTGGTTACTCTTCT
GTGACCAGCTGCGCAGTGAATGGGAGGGGGCCAGTTTAGACAGAGTTGATGCGGGTCGGGTTTATATCAGGCATGATGGT
CAGGCCCTGTCCTTTGGCAAGTCACGGTCAGATGATTTTCGTAAAACCAATGACCGGGGGCAGGGCTACCAGCCCATGCT
TTACGGTGTCAAGTCGGCTAGCTATAGTCAATCTGGTCAGATTGTTCGATTGGATGTGACGTTTGAAACTGGCGAGGAGA
GGAGTTTCGTCTATGATTTTGAAGAAAAAGGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA159	51.389	100	0.514
comYF	Streptococcus mutans UA140	50.694	100	0.507
comGF/cglF	Streptococcus pneumoniae Rx1	48.921	96.528	0.472
comGF/cglF	Streptococcus pneumoniae D39	48.921	96.528	0.472
comGF/cglF	Streptococcus pneumoniae R6	48.921	96.528	0.472
comGF/cglF	Streptococcus pneumoniae TIGR4	48.921	96.528	0.472
comGF/cglF	Streptococcus mitis NCTC 12261	49.275	95.833	0.472
comGF/cglF	Streptococcus mitis SK321	48.551	95.833	0.465
comGF	Lactococcus lactis subsp. cremoris KW2	43.571	97.222	0.424