Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   AB1723_RS10680 Genome accession   NZ_CP160633
Coordinates   2297596..2298024 (-) Length   142 a.a.
NCBI ID   WP_367380155.1    Uniprot ID   -
Organism   Stenotrophomonas cyclobalanopsidis strain Ed1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2292596..2303024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1723_RS10670 (AB1723_10665) - 2293863..2296916 (-) 3054 WP_367380153.1 fused MFS/spermidine synthase -
  AB1723_RS10675 (AB1723_10670) - 2297041..2297466 (-) 426 WP_367380154.1 pilin -
  AB1723_RS10680 (AB1723_10675) pilE 2297596..2298024 (-) 429 WP_367380155.1 pilin Machinery gene
  AB1723_RS10685 (AB1723_10680) pilC 2298381..2299640 (+) 1260 WP_367380156.1 type II secretion system F family protein Machinery gene
  AB1723_RS10690 (AB1723_10685) - 2299649..2300512 (+) 864 WP_367380157.1 A24 family peptidase -
  AB1723_RS10695 (AB1723_10690) coaE 2300523..2301134 (+) 612 WP_367380158.1 dephospho-CoA kinase -
  AB1723_RS10700 (AB1723_10695) - 2301238..2302305 (+) 1068 WP_367380159.1 AI-2E family transporter -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14631.75 Da        Isoelectric Point: 8.9788

>NTDB_id=1021731 AB1723_RS10680 WP_367380155.1 2297596..2298024(-) (pilE) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MKNQKGFTLIELMIVVAIIAILAAIALPAYQDYLIRSQVSEGLTLTSGAKSAVAETYSNTGAFPADNAAAGLEAKGNIKG
KYVTEVEVKNNVITATFGGDSNSKIAGGTLKLTGTDNNGSISWACAGDGTKVAAKYLPKACR

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1021731 AB1723_RS10680 WP_367380155.1 2297596..2298024(-) (pilE) [Stenotrophomonas cyclobalanopsidis strain Ed1]
ATGAAGAACCAGAAGGGCTTTACCCTGATCGAACTGATGATCGTCGTTGCGATCATCGCCATCCTGGCTGCTATCGCTCT
GCCGGCCTACCAGGACTACCTGATCCGTTCGCAGGTTTCGGAAGGCCTGACCCTGACCTCGGGCGCGAAGTCGGCTGTTG
CTGAGACCTACTCCAACACCGGCGCATTCCCGGCTGACAACGCCGCTGCCGGCCTGGAGGCCAAGGGCAACATCAAAGGC
AAGTACGTGACCGAGGTGGAGGTCAAGAACAACGTGATCACCGCGACCTTCGGCGGTGACTCCAACTCCAAGATCGCTGG
CGGCACGCTGAAGCTGACCGGTACCGACAACAACGGTTCGATCTCCTGGGCTTGCGCCGGCGACGGTACCAAGGTTGCTG
CCAAGTACCTGCCGAAGGCCTGCCGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-142)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

51.613

100

0.563
  pilE Neisseria gonorrhoeae strain FA1090

48.052

100

0.521
  pilA2 Legionella pneumophila strain ERS1305867

50.704

100

0.507
  pilA2 Legionella pneumophila str. Paris

50.704

100

0.507
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

37.5

100

0.486
  comP Acinetobacter baylyi ADP1

44.516

100

0.486
  pilA Ralstonia pseudosolanacearum GMI1000

39.394

100

0.458
  pilA/pilA1 Eikenella corrodens VA1

41.29

100

0.451
  pilA Vibrio cholerae C6706

39.735

100

0.423
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

39.735

100

0.423
  pilA Vibrio cholerae strain A1552

39.735

100

0.423
  pilA Acinetobacter baumannii strain A118

40.69

100

0.415
  pilA Pseudomonas aeruginosa PAK

38.562

100

0.415
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.621

100

0.394

Multiple sequence alignment