Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AB1723_RS10685 Genome accession   NZ_CP160633
Coordinates   2298381..2299640 (+) Length   419 a.a.
NCBI ID   WP_367380156.1    Uniprot ID   -
Organism   Stenotrophomonas cyclobalanopsidis strain Ed1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2293381..2304640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB1723_RS10670 (AB1723_10665) - 2293863..2296916 (-) 3054 WP_367380153.1 fused MFS/spermidine synthase -
  AB1723_RS10675 (AB1723_10670) - 2297041..2297466 (-) 426 WP_367380154.1 pilin -
  AB1723_RS10680 (AB1723_10675) pilE 2297596..2298024 (-) 429 WP_367380155.1 pilin Machinery gene
  AB1723_RS10685 (AB1723_10680) pilC 2298381..2299640 (+) 1260 WP_367380156.1 type II secretion system F family protein Machinery gene
  AB1723_RS10690 (AB1723_10685) - 2299649..2300512 (+) 864 WP_367380157.1 A24 family peptidase -
  AB1723_RS10695 (AB1723_10690) coaE 2300523..2301134 (+) 612 WP_367380158.1 dephospho-CoA kinase -
  AB1723_RS10700 (AB1723_10695) - 2301238..2302305 (+) 1068 WP_367380159.1 AI-2E family transporter -
  AB1723_RS10705 (AB1723_10700) - 2302678..2303094 (-) 417 WP_367380160.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45611.83 Da        Isoelectric Point: 10.0748

>NTDB_id=1021732 AB1723_RS10685 WP_367380156.1 2298381..2299640(+) (pilC) [Stenotrophomonas cyclobalanopsidis strain Ed1]
MSVSRSAIKKEPVARSTMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPSQVKAKPKPLFGSAGKAVTPKD
IAFFSRQMATMMKSGVPIVSALEIIGGGHKNPRMKKMVDGIRTDIEGGSSLYEAVSKFPVQFDELYRNLVRAGEGAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVVVVAALVSTIMLIFVVPQFEDVFKGFGAELPAFTQMIVAASRFMVSWWWL
IAAVVIGATVAAYMSYNRSPKMQHAFDRLILKVPVIGQIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVIRMRDDVSVGYPVNVAMKQQNIFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDSLSSLLEPMIMVFIGVVV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1021732 AB1723_RS10685 WP_367380156.1 2298381..2299640(+) (pilC) [Stenotrophomonas cyclobalanopsidis strain Ed1]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCGCGTAGCACCATGGAGCTGCAACCGTTTGTCTGGGAGGG
GACCGACAAGCGAGGTGTGAAGATGAAAGGGGAGCAGCTGGCGAAGAACGCCAACTTGCTGCGTGCGGAGCTGCGCCGCC
AAGGAATCAACCCTAGCCAAGTGAAGGCAAAGCCGAAGCCTCTGTTCGGCTCAGCCGGCAAGGCGGTCACCCCGAAGGAC
ATCGCGTTCTTCAGCCGGCAGATGGCCACTATGATGAAGTCCGGTGTACCGATCGTGTCTGCGCTGGAGATCATCGGCGG
AGGCCACAAGAACCCACGCATGAAAAAAATGGTGGATGGCATCCGCACGGATATCGAGGGGGGTTCTTCTCTATATGAAG
CGGTCAGCAAGTTCCCCGTTCAGTTCGACGAGCTCTATCGCAATCTGGTTCGTGCTGGCGAGGGCGCAGGTGTGCTGGAA
ACGGTACTGGACACCATTGCGAGTTACAAAGAGAACATTGAGGCCTTGAAAGGCAAGATAAAAAAGGCCCTCTTCTATCC
TGCTATGGTGGTCGTGGTGGCGGCTCTGGTCAGCACTATCATGCTGATCTTCGTGGTCCCTCAGTTTGAGGACGTCTTCA
AGGGGTTTGGCGCAGAACTGCCTGCTTTTACGCAGATGATTGTGGCAGCCTCGCGCTTCATGGTTTCCTGGTGGTGGTTG
ATAGCTGCCGTGGTGATCGGGGCGACAGTGGCGGCGTACATGAGCTACAACCGATCTCCCAAGATGCAGCACGCGTTCGA
CAGACTGATCCTCAAAGTACCTGTGATCGGCCAGATCATGAACAATAGTGCGATCGCTCGCTTCGCACGCACCACTGCGG
TTACCTTCAAGGCAGGCGTGCCCCTTGTGGAGGCCCTCGGCATTGTTGCCGGCGCCACCGGCAACAAGGTCTACGAAGAG
GCCGTGATACGCATGCGTGACGACGTCTCCGTCGGCTACCCAGTCAATGTTGCGATGAAGCAGCAAAACATCTTCCCGCA
CATGGTCATCCAGATGACCGGTATCGGTGAAGAGGCCGGCGCTTTGGATGCCATGCTATTCAAGGTGGCAGAGTATTATG
AGCAGGAAGTCAACAATGCCGTGGATTCCCTGAGCAGCCTGCTCGAACCGATGATCATGGTGTTCATCGGTGTTGTCGTA
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.04

94.511

0.511
  pilC Legionella pneumophila strain ERS1305867

51.128

95.227

0.487
  pilC Acinetobacter baylyi ADP1

49.631

97.136

0.482
  pilC Acinetobacter baumannii D1279779

50.126

94.749

0.475
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilG Neisseria meningitidis 44/76-A

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

40.648

95.704

0.389
  pilC Thermus thermophilus HB27

38.519

96.659

0.372

Multiple sequence alignment