Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   ABKJ27_RS08460 Genome accession   NZ_CP157578
Coordinates   1740505..1740828 (-) Length   107 a.a.
NCBI ID   WP_020903620.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735505..1745828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS08420 (ABKJ27_08430) rnpA 1735633..1736004 (-) 372 WP_000739245.1 ribonuclease P protein component -
  ABKJ27_RS08425 (ABKJ27_08435) - 1736154..1737344 (-) 1191 WP_000167763.1 acetate kinase -
  ABKJ27_RS08430 (ABKJ27_08440) comYH 1737394..1738347 (-) 954 WP_410011679.1 class I SAM-dependent methyltransferase Machinery gene
  ABKJ27_RS08435 (ABKJ27_08445) - 1738408..1738995 (-) 588 WP_261052044.1 class I SAM-dependent methyltransferase -
  ABKJ27_RS08440 (ABKJ27_08450) comGG/cglG 1739028..1739441 (-) 414 WP_223340416.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKJ27_RS08445 (ABKJ27_08455) comGF/cglF 1739419..1739880 (-) 462 WP_020903618.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKJ27_RS08450 (ABKJ27_08460) comGE/cglE 1739843..1740145 (-) 303 WP_153197443.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKJ27_RS08455 (ABKJ27_08465) comGD/cglD 1740108..1740542 (-) 435 WP_410011680.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKJ27_RS08460 (ABKJ27_08470) comGC/cglC 1740505..1740828 (-) 324 WP_020903620.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKJ27_RS08465 (ABKJ27_08475) comGB/cglB 1740830..1741846 (-) 1017 WP_410012147.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKJ27_RS08470 (ABKJ27_08480) comGA/cglA/cilD 1741794..1742735 (-) 942 WP_410011681.1 competence type IV pilus ATPase ComGA Machinery gene
  ABKJ27_RS08475 (ABKJ27_08485) - 1742812..1743177 (-) 366 WP_000286405.1 DUF1033 family protein -
  ABKJ27_RS08480 (ABKJ27_08490) - 1743422..1744480 (-) 1059 WP_004257473.1 zinc-dependent alcohol dehydrogenase family protein -
  ABKJ27_RS08485 (ABKJ27_08495) nagA 1744643..1745794 (-) 1152 WP_410011682.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11982.11 Da        Isoelectric Point: 9.6932

>NTDB_id=1007492 ABKJ27_RS08460 WP_020903620.1 1740505..1740828(-) (comGC/cglC) [Streptococcus sp. KHUD_011]
MKKMMTLLKKAKVKAFTLVEMLVVLLIISVLLLLFVPNLTKQKEAVNDKGKAAVVKVVESQAELYSLDKNEEASLSKLQD
DGRITEEQAKAYKEYHAKQNTSQTVAD

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1007492 ABKJ27_RS08460 WP_020903620.1 1740505..1740828(-) (comGC/cglC) [Streptococcus sp. KHUD_011]
ATGAAAAAAATGATGACATTATTGAAAAAAGCTAAGGTTAAAGCTTTTACACTTGTGGAAATGTTGGTAGTCTTGCTCAT
CATCAGCGTGCTTCTATTACTCTTTGTACCTAATCTGACCAAGCAAAAAGAAGCAGTCAATGACAAAGGAAAAGCTGCTG
TTGTTAAGGTGGTGGAAAGCCAGGCAGAACTTTATAGCTTAGATAAGAATGAAGAAGCTAGCCTAAGCAAGTTACAAGAC
GATGGGCGCATCACGGAAGAACAGGCTAAAGCTTATAAAGAATACCATGCTAAACAAAATACCAGCCAAACCGTTGCAGA
TTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

97.196

100

0.972
  comGC/cglC Streptococcus mitis SK321

91.176

95.327

0.869
  comGC/cglC Streptococcus pneumoniae Rx1

89.216

95.327

0.85
  comGC/cglC Streptococcus pneumoniae D39

89.216

95.327

0.85
  comGC/cglC Streptococcus pneumoniae R6

89.216

95.327

0.85
  comGC/cglC Streptococcus pneumoniae TIGR4

87.379

96.262

0.841
  comYC Streptococcus gordonii str. Challis substr. CH1

67.619

98.131

0.664
  comYC Streptococcus mutans UA140

67.368

88.785

0.598
  comYC Streptococcus mutans UA159

67.368

88.785

0.598
  comYC Streptococcus suis isolate S10

65.217

85.981

0.561
  comGC Lactococcus lactis subsp. cremoris KW2

50.435

100

0.542
  comGC Staphylococcus aureus MW2

48.837

80.374

0.393
  comGC Staphylococcus aureus N315

48.837

80.374

0.393

Multiple sequence alignment