Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB/cglB   Type   Machinery gene
Locus tag   ABKJ27_RS08465 Genome accession   NZ_CP157578
Coordinates   1740830..1741846 (-) Length   338 a.a.
NCBI ID   WP_410012147.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1735830..1746846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS08425 (ABKJ27_08435) - 1736154..1737344 (-) 1191 WP_000167763.1 acetate kinase -
  ABKJ27_RS08430 (ABKJ27_08440) comYH 1737394..1738347 (-) 954 WP_410011679.1 class I SAM-dependent methyltransferase Machinery gene
  ABKJ27_RS08435 (ABKJ27_08445) - 1738408..1738995 (-) 588 WP_261052044.1 class I SAM-dependent methyltransferase -
  ABKJ27_RS08440 (ABKJ27_08450) comGG/cglG 1739028..1739441 (-) 414 WP_223340416.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKJ27_RS08445 (ABKJ27_08455) comGF/cglF 1739419..1739880 (-) 462 WP_020903618.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKJ27_RS08450 (ABKJ27_08460) comGE/cglE 1739843..1740145 (-) 303 WP_153197443.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKJ27_RS08455 (ABKJ27_08465) comGD/cglD 1740108..1740542 (-) 435 WP_410011680.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKJ27_RS08460 (ABKJ27_08470) comGC/cglC 1740505..1740828 (-) 324 WP_020903620.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKJ27_RS08465 (ABKJ27_08475) comGB/cglB 1740830..1741846 (-) 1017 WP_410012147.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKJ27_RS08470 (ABKJ27_08480) comGA/cglA/cilD 1741794..1742735 (-) 942 WP_410011681.1 competence type IV pilus ATPase ComGA Machinery gene
  ABKJ27_RS08475 (ABKJ27_08485) - 1742812..1743177 (-) 366 WP_000286405.1 DUF1033 family protein -
  ABKJ27_RS08480 (ABKJ27_08490) - 1743422..1744480 (-) 1059 WP_004257473.1 zinc-dependent alcohol dehydrogenase family protein -
  ABKJ27_RS08485 (ABKJ27_08495) nagA 1744643..1745794 (-) 1152 WP_410011682.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 38561.62 Da        Isoelectric Point: 9.4587

>NTDB_id=1007493 ABKJ27_RS08465 WP_410012147.1 1740830..1741846(-) (comGB/cglB) [Streptococcus sp. KHUD_011]
MDISQVFRLKQKKLATAKQKNIITLFNNLFSSGFHLVETISFLDRSALLDKQCVTQMRTGLSQGKSFSEMMESLGFSSAI
VTQLSLAEVHGNLHLSLGKIEEYLDNLAKVKKKLIEVATYPLILLGFLLLIMLGLRNYLLPQLDSSNIATQIIGNLPQIF
LGMVGFVFILALLALTFYKRSSKMRVFSILARLPFLGIFVQTYLTAYYAREWGNMISQGMELMQIFQMMQEQGSQLFKEI
GQDLAQSLQNGREFSQTIGTYPFFKKELSLIIEYGEVKSKLGSELEIYAEKTWEAFFTRVNRTMNLVQPLVFIFVALIIV
LLYAAMLMPMYQNMEVNF

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=1007493 ABKJ27_RS08465 WP_410012147.1 1740830..1741846(-) (comGB/cglB) [Streptococcus sp. KHUD_011]
ATGGACATATCACAAGTCTTCAGGCTGAAACAGAAAAAATTAGCTACAGCTAAGCAAAAAAATATCATCACCCTGTTTAA
TAATCTCTTTTCCAGCGGTTTTCATCTGGTGGAGACCATTTCCTTTTTAGATAGGAGTGCCTTGTTGGACAAGCAGTGCG
TGACCCAGATGCGCACAGGTTTGTCTCAGGGAAAATCATTCTCAGAAATGATGGAAAGTTTGGGTTTTTCAAGTGCCATT
GTCACTCAGTTATCCCTAGCTGAAGTTCATGGGAACCTCCACCTGAGTTTGGGAAAGATAGAAGAGTATCTAGACAATCT
TGCCAAGGTCAAGAAAAAATTAATTGAAGTAGCGACCTATCCCTTGATTTTACTAGGTTTTCTTCTCTTAATCATGCTGG
GACTACGTAACTACCTACTACCCCAACTGGATAGTAGCAATATTGCCACCCAAATCATTGGTAATCTGCCACAAATTTTT
CTAGGAATGGTAGGGTTTGTTTTCATACTTGCCCTTTTAGCACTAACTTTTTATAAAAGAAGTTCTAAGATGCGCGTCTT
TTCTATCTTAGCACGCCTTCCCTTTCTTGGAATCTTTGTGCAGACCTATTTGACAGCCTATTATGCGCGTGAGTGGGGGA
ATATGATTTCGCAGGGGATGGAGCTGATGCAGATTTTTCAGATGATGCAGGAACAAGGTTCCCAGCTCTTTAAAGAAATC
GGTCAAGATTTAGCTCAATCCCTACAAAATGGCCGCGAATTTTCTCAGACGATAGGAACCTATCCTTTCTTTAAGAAGGA
GTTGAGTCTCATCATCGAGTATGGGGAAGTCAAGTCCAAGCTGGGTAGTGAGTTGGAAATCTATGCTGAAAAAACTTGGG
AAGCCTTTTTTACCCGAGTCAACCGCACCATGAATTTGGTGCAACCGCTGGTTTTTATCTTTGTGGCTCTGATTATCGTT
TTACTTTATGCGGCAATGCTCATGCCTATGTATCAAAATATGGAGGTAAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(24-141)

Type II secretion system (T2SS), protein F (T2SSF)

(209-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB/cglB Streptococcus mitis SK321

96.746

100

0.967
  comGB/cglB Streptococcus mitis NCTC 12261

95.858

100

0.959
  comGB/cglB Streptococcus pneumoniae Rx1

95.858

100

0.959
  comGB/cglB Streptococcus pneumoniae D39

95.858

100

0.959
  comGB/cglB Streptococcus pneumoniae R6

95.858

100

0.959
  comGB/cglB Streptococcus pneumoniae TIGR4

95.858

100

0.959
  comYB Streptococcus gordonii str. Challis substr. CH1

72.917

99.408

0.725
  comYB Streptococcus mutans UA140

58.991

93.787

0.553
  comYB Streptococcus mutans UA159

58.991

93.787

0.553
  comGB Lactococcus lactis subsp. cremoris KW2

50.898

98.817

0.503

Multiple sequence alignment