Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   ABKJ27_RS08430 Genome accession   NZ_CP157578
Coordinates   1737394..1738347 (-) Length   317 a.a.
NCBI ID   WP_410011679.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1732394..1743347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS08405 (ABKJ27_08415) - 1733156..1733779 (-) 624 WP_410011678.1 HI_0552 family protein -
  ABKJ27_RS08410 (ABKJ27_08420) jag 1733830..1734816 (-) 987 WP_020902385.1 RNA-binding cell elongation regulator Jag/EloR -
  ABKJ27_RS08415 (ABKJ27_08425) - 1734834..1735658 (-) 825 WP_205008446.1 membrane protein insertase YidC -
  ABKJ27_RS08420 (ABKJ27_08430) rnpA 1735633..1736004 (-) 372 WP_000739245.1 ribonuclease P protein component -
  ABKJ27_RS08425 (ABKJ27_08435) - 1736154..1737344 (-) 1191 WP_000167763.1 acetate kinase -
  ABKJ27_RS08430 (ABKJ27_08440) comYH 1737394..1738347 (-) 954 WP_410011679.1 class I SAM-dependent methyltransferase Machinery gene
  ABKJ27_RS08435 (ABKJ27_08445) - 1738408..1738995 (-) 588 WP_261052044.1 class I SAM-dependent methyltransferase -
  ABKJ27_RS08440 (ABKJ27_08450) comGG/cglG 1739028..1739441 (-) 414 WP_223340416.1 competence type IV pilus minor pilin ComGG Machinery gene
  ABKJ27_RS08445 (ABKJ27_08455) comGF/cglF 1739419..1739880 (-) 462 WP_020903618.1 competence type IV pilus minor pilin ComGF Machinery gene
  ABKJ27_RS08450 (ABKJ27_08460) comGE/cglE 1739843..1740145 (-) 303 WP_153197443.1 competence type IV pilus minor pilin ComGE Machinery gene
  ABKJ27_RS08455 (ABKJ27_08465) comGD/cglD 1740108..1740542 (-) 435 WP_410011680.1 competence type IV pilus minor pilin ComGD Machinery gene
  ABKJ27_RS08460 (ABKJ27_08470) comGC/cglC 1740505..1740828 (-) 324 WP_020903620.1 competence type IV pilus major pilin ComGC Machinery gene
  ABKJ27_RS08465 (ABKJ27_08475) comGB/cglB 1740830..1741846 (-) 1017 WP_410012147.1 competence type IV pilus assembly protein ComGB Machinery gene
  ABKJ27_RS08470 (ABKJ27_08480) comGA/cglA/cilD 1741794..1742735 (-) 942 WP_410011681.1 competence type IV pilus ATPase ComGA Machinery gene
  ABKJ27_RS08475 (ABKJ27_08485) - 1742812..1743177 (-) 366 WP_000286405.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35644.90 Da        Isoelectric Point: 4.3154

>NTDB_id=1007487 ABKJ27_RS08430 WP_410011679.1 1737394..1738347(-) (comYH) [Streptococcus sp. KHUD_011]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKENNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEKEITILEMGSGMGILGATFLTSLDKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFIQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SELLKGWLKEEASLVAMISLPENLFASAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1007487 ABKJ27_RS08430 WP_410011679.1 1737394..1738347(-) (comYH) [Streptococcus sp. KHUD_011]
ATGGATTTTGAAAAAATTGAACAAGCTTATACGTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCCTGGTGGAGCAAAACAGCATCTATTTGGATGGTGAGACTGAGTTAGAGCAGGTCAAGGAAAACAATC
AGGCCCTTAAACGCTTAGCGCTTCGCAAAGAAGAATGGCTCAAAACCTACCAGTTTCTCTTGATGAAGGCTGGGCAGACA
GAGCCCCTACAGGCCAATCACCAGTTTACACCAGATGCCATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGTTGTTTAA
AGAGAAGGAGATTACGATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTGATAAAA
AGGTGGATTACTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTATCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGACATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGTCTAAAGTATCTCAAGTCAGACGGATACGCTATTTTTCTCGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGAGTTGTTGAAAGGCTGGTTGAAAGAAGAGGCCAGTTTGGTTGCCATGATTAGTCTGCCTGAAAATCTTTTTGCTAG
TGCTAAACAATCCAAGACTATTTTTATCTTACAGAAGAAAAGTGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCCTACAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment