Detailed information NTG1001979

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: EL140_RS01675
• Genome accession: NZ_LR134336
• Coordinates: 328841..331210 (-)
• Length: 789 a.a.
• NCBI ID: WP_000454456.1
• Uniprot ID: -
• Organism: Streptococcus oralis ATCC 35037 strain NCTC 11427
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 323841..336210

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL140_RS01650 (NCTC11427_00323)	liaF	324426..325124 (+)	699	WP_000714491.1	cell wall-active antibiotics response protein LiaF	-
EL140_RS01655 (NCTC11427_00324)	-	325121..326119 (+)	999	WP_000744931.1	sensor histidine kinase	-
EL140_RS01660 (NCTC11427_00325)	vraR	326130..326762 (+)	633	WP_000698402.1	response regulator	Regulator
EL140_RS01665 (NCTC11427_00326)	-	326763..327419 (+)	657	WP_000050041.1	DNA alkylation repair protein	-
EL140_RS01670 (NCTC11427_00327)	tig	327510..328793 (+)	1284	WP_000116506.1	trigger factor	-
EL140_RS01675 (NCTC11427_00328)	recD/recD2/recDB	328841..331210 (-)	2370	WP_000454456.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL140_RS01680 (NCTC11427_00329)	lepB	331340..331954 (-)	615	WP_001083991.1	signal peptidase I	-
EL140_RS01685 (NCTC11427_00330)	rnhC	331958..332839 (-)	882	WP_000146906.1	ribonuclease HIII	-
EL140_RS01690 (NCTC11427_00331)	zapA	332926..333228 (+)	303	WP_000002028.1	cell division protein ZapA	-
EL140_RS01695 (NCTC11427_00332)	-	333225..333773 (+)	549	WP_000623532.1	CvpA family protein	-
EL140_RS01700 (NCTC11427_00333)	mutS/mutS2	333874..336210 (+)	2337	WP_001092924.1	endonuclease MutS2	Machinery gene

Sequence

Protein

• Length: 789 a.a.
• Molecular weight: 88473.31 Da
• Isoelectric Point: 4.5741

>NTDB_id=1001979 EL140_RS01675 WP_000454456.1 328841..331210(-) (recD/recD2/recDB) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQINRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLESIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELAHLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKKQIQDLETIHKH
ISTVEQELGIQYDTIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLSILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIPLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKPDRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPQQKGQVNFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASKRMLERNLIYTAITRAKSKLILLGELQAFDYAVK
HIGTARKTYLIERFSDLIETNIEESKQAFSETATASDSEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide

• Length: 2370 bp

>NTDB_id=1001979 EL140_RS01675 WP_000454456.1 328841..331210(-) (recD/recD2/recDB) [Streptococcus oralis ATCC 35037 strain NCTC 11427]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGGATTATTTTTGAAAATCCCAGTAATTTTTATCGTATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTTGACGATTTTGAAATCATCGTCACCGGAACCATGGCGGACGTGATTGAAGGGG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTTCAGATCAACCGTTATGAACGCGCA
AAACCAACTAGTAAGGGCCTCGTCAAGTACTTTTCTAGCAGTCATTTCAAGGGAATTGGTCTCAAAACGGCCCAAAAAAT
CGTTGATAGCTACGGTGACAATACCATAGACGAAATTCTGGAGCATCCTGAAAAGCTGGAAAGCATTGCAGGACTCTCTG
CAAAAAACCGTGAGGCTTTTGTTTCCACCCTCCGTCTCAACTATGGGACAGAAATGGTCTTGGCAAAACTAGCTAACTAC
GGCATTCCCAATAAACTGGCCTTTCAAATTCAAGACTTTTACAAGGAAGAAACCCTCGATGTGGTTGAAAATTATCCCTA
CCAACTGGTTGAAGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAATTGGCTGCCGAACTAGGCATCGAAAGTCAGG
CACCCGAACGCTTCCGTGCTGGCCTTGTCCACAGTCTCTTTCAGGGATGTATGGATACGGGTGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAGACCCTGACTCTCCTCGAATCTTCCCGTCCCGTGGAACTGGATCCCAGCCAAGTAGCTCAGGA
ATTAGCTCATTTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCCGAAG
AAGGCATTCGCAGTCACTTGGTTCGCATCCTTGAAAAAGGAAAGAAACAAATTCAGGATCTAGAAACCATTCACAAGCAT
ATCTCTACTGTCGAGCAAGAACTGGGGATTCAGTACGATACCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTAACAGGTGGACCTGGTACTGGTAAGACGACGGTTATCAATGGGATTATCGCTGTTTATGCCCTTTTAG
AAGGGCTTGATCTCAGGAAGAAAAGCAACCTGTCGATTCTTCTCGCTGCTCCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTAACAGGTTTGCCTAGCGCGACCATACACCGTCATTTGGGGATGACAGGAGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCCGATTTTATCATTGTAGATGAGTTTTCCATGGTGGACACTTGGCTAGCCAACCAACTTTTCTCCAACA
TCTCTTCTAACAGTAAAATTCTCATCGTAGGTGATAGCGACCAGTTACCTTCTGTTAGTCCCGGACAAGTCCTGGCTGAC
CTGCTCCAGATACCCCTGATTCCTCAGACTCGCTTGGAACGGATTTACCGTCAGAGTGAAGAATCAACTATCGTTACCTT
GGCGAGTCAGATTCGACAAGGCATCTTGCCAGCCGACTTTACCCAGAAAAAACCTGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATCCCAGCTACCATTGAGAAAATCCTCGGTGCTGCCCTCAGAAGTGGCATTCCGGCTCGAGATATTCAGGTG
CTAGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCAGCAAAA
GGGGCAAGTGAACTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGATGCCGAAG
TTAATGTCTTTAACGGAGACCTAGGCTACATCACAGACCTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTACCCACGTAACGAATGGTACAAGATTCGACTAGCCTATGCCATGAGTAT
CCATAAGTCTCAGGGAAGTGAGTTTCCCGTTGTCATCCTGCCCATCACCAGTGCTAGCAAGCGCATGCTGGAACGCAATC
TCATCTACACAGCTATCACACGAGCCAAGAGCAAGCTCATCCTTCTTGGCGAGTTACAGGCCTTTGACTATGCAGTTAAG
CATATCGGGACTGCTCGCAAGACCTATCTGATTGAGCGTTTCAGTGATTTAATTGAAACTAATATTGAAGAAAGTAAACA
AGCCTTCTCTGAAACTGCCACAGCAAGTGACTCTGAACAATCCTACATCCTCACCGAGGAAAACTGGTCTAGCATCCCAG
CCATGATCGGGATTACAGATGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

• AAA domain (AAA_30) (332-517)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (662-709)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (574-644)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.021	95.311	0.401