NT genes of 'Rodentibacter caecimuris strain G1'


In this species, transformation by exogenous DNA is regulated by the presence of a specific Uptake Signal Sequence (USS) (PMID: 17038178).
Evidence:

Gene name Gene type Function Related MGE Organism Genome accession Locus tag Protein ID
insolico rec2 Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS00190 WP_164028784.1
insolico comN Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS00255 WP_059365383.1
insolico comO Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS00260 WP_059365382.1
insolico comP Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS00265 WP_059365381.1
insolico comQ Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS00270 WP_059365380.1
insolico pilF/pilF2 Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS04030 WP_164027766.1
insolico ssb Machinery gene DNA processing - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS05310 WP_164027874.1
insolico pilA Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS05895 WP_059365849.1
insolico pilB Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS05900 WP_059365850.1
insolico pilC Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS05905 WP_059365851.1
insolico pilD Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS05910 WP_164027912.1
insolico comE1/comEA Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS06065 WP_059365881.1
insolico recA Machinery gene Homologous recombination - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS06630 WP_059365986.1
insolico comM Machinery gene Involve in natural transformation - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS07390 WP_164028034.1
insolico comE Machinery gene DNA binding and uptake - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS07405 WP_059368781.1
insolico sxy/tfoX Regulator Competence regulation - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS07525 WP_069029757.1
insolico recA Machinery gene Homologous recombination - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS07530 WP_059368766.1
insolico ssb Machinery gene DNA processing - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS09835 WP_135969522.1
insolico dprA Machinery gene DNA processing - Rodentibacter caecimuris strain G1 NZ_CP040863 FEE42_RS10770 WP_164028542.1

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    experimental Experimentally validated     insolico Bioinformatically predicted