Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FEE42_RS05310 Genome accession   NZ_CP040863
Coordinates   1033287..1033730 (-) Length   147 a.a.
NCBI ID   WP_164027874.1    Uniprot ID   -
Organism   Rodentibacter caecimuris strain G1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1028287..1038730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS05290 (FEE42_05265) - 1029355..1031364 (-) 2010 WP_164027871.1 DNA topoisomerase III -
  FEE42_RS05295 (FEE42_05270) - 1031433..1031723 (-) 291 WP_164027872.1 hypothetical protein -
  FEE42_RS05300 (FEE42_05275) - 1031856..1032551 (+) 696 WP_077476108.1 hypothetical protein -
  FEE42_RS05305 (FEE42_05280) - 1032761..1033231 (-) 471 WP_164027873.1 hypothetical protein -
  FEE42_RS05310 (FEE42_05285) ssb 1033287..1033730 (-) 444 WP_164027874.1 single-stranded DNA-binding protein Machinery gene
  FEE42_RS05315 (FEE42_05290) - 1033754..1033945 (-) 192 WP_164027875.1 hypothetical protein -
  FEE42_RS05320 (FEE42_05295) - 1034051..1034530 (-) 480 WP_077476115.1 hypothetical protein -
  FEE42_RS05325 (FEE42_05300) - 1034612..1035169 (-) 558 WP_077476117.1 hypothetical protein -
  FEE42_RS05330 (FEE42_05305) - 1035377..1035871 (-) 495 WP_077476119.1 DUF3158 family protein -
  FEE42_RS05335 (FEE42_05310) - 1035881..1036627 (-) 747 WP_077476121.1 PFL_4669 family integrating conjugative element protein -
  FEE42_RS12665 - 1036863..1038095 (-) 1233 WP_206023161.1 STY4528 family pathogenicity island replication protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16627.40 Da        Isoelectric Point: 6.3318

>NTDB_id=367720 FEE42_RS05310 WP_164027874.1 1033287..1033730(-) (ssb) [Rodentibacter caecimuris strain G1]
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWTDKNTGERREMTEWHRIVFYRRQAEICGEYLKKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGSRPQNSNSAPGHQSSHQSAQQPHLEQPPMGGFDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=367720 FEE42_RS05310 WP_164027874.1 1033287..1033730(-) (ssb) [Rodentibacter caecimuris strain G1]
ATGGCTGGCGTAAATAAAGTAATTATTGTTGGACACCTTGGAAATGATCCTGAAATTCGTACTATGCCAAACGGGGATGC
TGTTGCGAATATTAGTGTGGCAACCAGTGAAAGTTGGACGGATAAAAATACCGGTGAACGCCGTGAAATGACTGAATGGC
ACAGAATTGTGTTTTACCGCCGTCAAGCCGAAATCTGCGGTGAATATTTGAAGAAAGGTTCGCAAGTTTATGTTGAAGGA
CGTTTGCGTACCCGTAAATGGCAAGACCAAAATGGTCAAGATCGCTACACAACCGAAATCCAGGGTGATGTGATGCAGAT
GTTAGGTTCTCGTCCGCAAAATTCAAATTCAGCACCTGGTCATCAATCTTCTCATCAGTCGGCTCAACAACCTCATTTAG
AGCAGCCTCCAATGGGTGGATTTGATGATGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

61.667

100

0.755
  ssb Vibrio cholerae strain A1552

52.874

100

0.626
  ssb Neisseria meningitidis MC58

45.087

100

0.531
  ssb Neisseria gonorrhoeae MS11

45.087

100

0.531
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.374

Multiple sequence alignment