Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | FEE42_RS06065 | Genome accession | NZ_CP040863 |
| Coordinates | 1195980..1196318 (+) | Length | 112 a.a. |
| NCBI ID | WP_059365881.1 | Uniprot ID | A0A9X8VZF0 |
| Organism | Rodentibacter caecimuris strain G1 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1190980..1201318
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEE42_RS06035 | - | 1191568..1191798 (-) | 231 | WP_164027929.1 | hypothetical protein | - |
| FEE42_RS06040 (FEE42_06015) | - | 1192128..1192592 (+) | 465 | WP_164027930.1 | hypothetical protein | - |
| FEE42_RS06045 (FEE42_06020) | - | 1192662..1193399 (-) | 738 | WP_164027931.1 | ABC transporter ATP-binding protein | - |
| FEE42_RS06050 (FEE42_06025) | - | 1193413..1194384 (-) | 972 | WP_164027932.1 | FecCD family ABC transporter permease | - |
| FEE42_RS06055 (FEE42_06030) | - | 1194412..1194987 (-) | 576 | WP_059365879.1 | L,D-transpeptidase family protein | - |
| FEE42_RS06060 (FEE42_06035) | - | 1194998..1195792 (-) | 795 | WP_164027933.1 | helical backbone metal receptor | - |
| FEE42_RS06065 (FEE42_06040) | comE1/comEA | 1195980..1196318 (+) | 339 | WP_059365881.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| FEE42_RS06070 (FEE42_06045) | - | 1196372..1196839 (-) | 468 | WP_164027934.1 | surface-adhesin E family protein | - |
| FEE42_RS06075 (FEE42_06050) | pflA | 1196875..1197615 (-) | 741 | WP_164027935.1 | pyruvate formate lyase 1-activating protein | - |
| FEE42_RS06080 (FEE42_06055) | pflB | 1197743..1200055 (-) | 2313 | WP_059365884.1 | formate C-acetyltransferase | - |
| FEE42_RS06085 (FEE42_06060) | focA | 1200108..1200959 (-) | 852 | WP_059365885.1 | formate transporter FocA | - |
Sequence
Protein
Download Length: 112 a.a. Molecular weight: 12290.14 Da Isoelectric Point: 9.5399
>NTDB_id=367726 FEE42_RS06065 WP_059365881.1 1195980..1196318(+) (comE1/comEA) [Rodentibacter caecimuris strain G1]
MKLIKTLIRTLLLGSALISASSFAEEKTVEPTATQTEITENVLSKNIGDKLNINTATASEIQKFLTGIGAKKAEAIVQYR
EKYGNFTTAEQLLEVQGIGKATLEKNRDRLTF
MKLIKTLIRTLLLGSALISASSFAEEKTVEPTATQTEITENVLSKNIGDKLNINTATASEIQKFLTGIGAKKAEAIVQYR
EKYGNFTTAEQLLEVQGIGKATLEKNRDRLTF
Nucleotide
Download Length: 339 bp
>NTDB_id=367726 FEE42_RS06065 WP_059365881.1 1195980..1196318(+) (comE1/comEA) [Rodentibacter caecimuris strain G1]
ATGAAATTAATTAAAACCTTAATTCGCACACTCCTTTTAGGAAGTGCATTAATTAGTGCAAGCTCATTTGCAGAAGAAAA
AACTGTGGAGCCTACGGCTACACAAACCGAGATTACCGAAAATGTGCTCTCAAAAAATATAGGCGATAAACTCAATATCA
ATACGGCAACGGCAAGTGAAATTCAAAAATTCTTAACCGGTATTGGGGCGAAAAAAGCAGAAGCAATCGTGCAATATCGT
GAAAAATACGGTAATTTCACTACAGCCGAGCAACTGCTTGAAGTGCAAGGGATTGGCAAAGCAACCCTTGAAAAAAATCG
TGATCGCTTAACTTTTTAA
ATGAAATTAATTAAAACCTTAATTCGCACACTCCTTTTAGGAAGTGCATTAATTAGTGCAAGCTCATTTGCAGAAGAAAA
AACTGTGGAGCCTACGGCTACACAAACCGAGATTACCGAAAATGTGCTCTCAAAAAATATAGGCGATAAACTCAATATCA
ATACGGCAACGGCAAGTGAAATTCAAAAATTCTTAACCGGTATTGGGGCGAAAAAAGCAGAAGCAATCGTGCAATATCGT
GAAAAATACGGTAATTTCACTACAGCCGAGCAACTGCTTGAAGTGCAAGGGATTGGCAAAGCAACCCTTGAAAAAAATCG
TGATCGCTTAACTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
66.964 |
100 |
0.67 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.455 |
98.214 |
0.545 |
| comEA | Vibrio cholerae C6706 |
42.991 |
95.536 |
0.411 |
| comEA | Vibrio cholerae strain A1552 |
42.991 |
95.536 |
0.411 |
| comEA | Vibrio campbellii strain DS40M4 |
43 |
89.286 |
0.384 |
| comEA | Legionella pneumophila strain ERS1305867 |
39.252 |
95.536 |
0.375 |
| comEA | Legionella pneumophila str. Paris |
39.252 |
95.536 |
0.375 |