Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   FEE42_RS00265 Genome accession   NZ_CP040863
Coordinates   57423..58112 (+) Length   229 a.a.
NCBI ID   WP_059365381.1    Uniprot ID   A0AAJ3K3A4
Organism   Rodentibacter caecimuris strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 52423..63112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS00240 (FEE42_00240) - 52766..53551 (+) 786 WP_164027416.1 Cof-type HAD-IIB family hydrolase -
  FEE42_RS00245 (FEE42_00245) - 53600..54988 (-) 1389 WP_059365385.1 cytochrome-c peroxidase -
  FEE42_RS00250 (FEE42_00250) suhB 55196..55999 (-) 804 WP_059365384.1 inositol-1-monophosphatase -
  FEE42_RS00255 (FEE42_00255) comN 56199..56714 (+) 516 WP_059365383.1 type II secretion system protein Machinery gene
  FEE42_RS00260 (FEE42_00260) comO 56719..57423 (+) 705 WP_059365382.1 PulJ/GspJ family protein Machinery gene
  FEE42_RS00265 (FEE42_00265) comP 57423..58112 (+) 690 WP_059365381.1 DUF2572 family protein Machinery gene
  FEE42_RS00270 (FEE42_00270) comQ 58105..58392 (+) 288 WP_059365380.1 DUF5374 domain-containing protein Machinery gene
  FEE42_RS00275 (FEE42_00275) recC 58444..61839 (+) 3396 WP_164028785.1 exodeoxyribonuclease V subunit gamma -
  FEE42_RS00280 (FEE42_00280) nrdR 61902..62351 (+) 450 WP_077543516.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25683.68 Da        Isoelectric Point: 8.9590

>NTDB_id=367714 FEE42_RS00265 WP_059365381.1 57423..58112(+) (comP) [Rodentibacter caecimuris strain G1]
MKQQGRKGVVTLAILIFLAGLLAVILLFDDSTLSFFRAQQMQRKNYVEQTLTLQKMTLLDQQNACSTLPLDNSDLVRQVF
INIEGAEDSIQYSLWCRRAAIFKKSPTKGDNQGLLASLIHLENLDEFRPLFSMPANPLVSNKMPQLYWFNGKQTEWEVNG
TVQGILVAEGDLILRGKGRVSGAVITGGRLTLEGVSLAYGKKIIEPLVQQYSKWQLAEKSWSDFKASNE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=367714 FEE42_RS00265 WP_059365381.1 57423..58112(+) (comP) [Rodentibacter caecimuris strain G1]
ATGAAACAACAGGGAAGAAAGGGCGTTGTTACGCTCGCCATTTTGATTTTTCTTGCCGGTTTGTTGGCGGTGATATTACT
TTTTGACGATAGCACTTTGAGTTTTTTTCGTGCGCAGCAAATGCAGCGTAAAAACTATGTAGAACAAACCTTAACGTTAC
AAAAAATGACGTTATTGGATCAGCAGAATGCCTGTTCAACACTTCCTTTGGATAATTCGGATCTTGTTCGGCAAGTTTTT
ATAAATATTGAGGGGGCAGAAGATTCGATTCAGTATTCTCTATGGTGTCGGCGTGCCGCCATATTTAAGAAGTCGCCGAC
AAAAGGGGATAATCAAGGTTTGTTGGCAAGCTTGATTCATTTAGAAAATCTTGATGAATTTCGACCGCTCTTTTCAATGC
CTGCTAACCCATTAGTATCGAATAAAATGCCGCAACTATATTGGTTTAATGGGAAACAAACGGAATGGGAAGTAAATGGC
ACAGTACAAGGCATTTTAGTAGCAGAAGGGGATTTAATATTACGGGGTAAAGGGCGGGTGAGCGGAGCGGTGATTACAGG
CGGGCGGCTAACATTAGAAGGCGTTAGTCTTGCCTATGGTAAAAAGATCATCGAACCTTTGGTGCAACAATACAGTAAAT
GGCAATTAGCGGAGAAAAGTTGGAGTGATTTTAAAGCCTCAAATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(7-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

62.5

97.817

0.611

Multiple sequence alignment