Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   FEE42_RS00260 Genome accession   NZ_CP040863
Coordinates   56719..57423 (+) Length   234 a.a.
NCBI ID   WP_059365382.1    Uniprot ID   A0A9X8VZV6
Organism   Rodentibacter caecimuris strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51719..62423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS00235 (FEE42_00235) ybeY 52243..52710 (+) 468 WP_164027415.1 rRNA maturation RNase YbeY -
  FEE42_RS00240 (FEE42_00240) - 52766..53551 (+) 786 WP_164027416.1 Cof-type HAD-IIB family hydrolase -
  FEE42_RS00245 (FEE42_00245) - 53600..54988 (-) 1389 WP_059365385.1 cytochrome-c peroxidase -
  FEE42_RS00250 (FEE42_00250) suhB 55196..55999 (-) 804 WP_059365384.1 inositol-1-monophosphatase -
  FEE42_RS00255 (FEE42_00255) comN 56199..56714 (+) 516 WP_059365383.1 type II secretion system protein Machinery gene
  FEE42_RS00260 (FEE42_00260) comO 56719..57423 (+) 705 WP_059365382.1 PulJ/GspJ family protein Machinery gene
  FEE42_RS00265 (FEE42_00265) comP 57423..58112 (+) 690 WP_059365381.1 DUF2572 family protein Machinery gene
  FEE42_RS00270 (FEE42_00270) comQ 58105..58392 (+) 288 WP_059365380.1 DUF5374 domain-containing protein Machinery gene
  FEE42_RS00275 (FEE42_00275) recC 58444..61839 (+) 3396 WP_164028785.1 exodeoxyribonuclease V subunit gamma -
  FEE42_RS00280 (FEE42_00280) nrdR 61902..62351 (+) 450 WP_077543516.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26210.19 Da        Isoelectric Point: 8.6942

>NTDB_id=367713 FEE42_RS00260 WP_059365382.1 56719..57423(+) (comO) [Rodentibacter caecimuris strain G1]
MKKGQTLLALMIALAISSALLLVVSQFYTDIQIQNRQLLLKLKLQAELQRTVQLIGKDLRRAGFRALNNKLIETNIGLFE
LDEKGAALLISQANNAPQNSCVLFFYDLNANGCVGEKYTKNTCLNRHQNVAKGVEKELFGYKLNNKMVETKQTYKSAINA
KCQSNECQKALQQTACNAGGGWTDLLDENEYEITHLQFNFIAERKGIEIQLAGNLKGNSTIQYETSMVVALWNQ

Nucleotide


Download         Length: 705 bp        

>NTDB_id=367713 FEE42_RS00260 WP_059365382.1 56719..57423(+) (comO) [Rodentibacter caecimuris strain G1]
ATGAAAAAAGGGCAAACATTACTCGCATTAATGATTGCATTGGCAATTTCATCCGCACTTTTATTGGTCGTTTCACAGTT
TTATACTGATATACAAATTCAGAATCGACAGCTTTTATTGAAATTAAAATTGCAGGCAGAATTACAACGAACGGTTCAGC
TTATAGGAAAAGATCTTCGTCGTGCAGGGTTTCGGGCATTAAATAATAAGTTGATTGAAACCAATATCGGTTTGTTTGAG
CTGGATGAAAAAGGCGCAGCGTTACTTATTTCACAAGCAAATAATGCACCCCAAAATAGCTGTGTCTTGTTCTTTTATGA
TCTCAACGCAAACGGATGTGTTGGCGAAAAATATACTAAAAATACCTGTTTGAATAGGCATCAAAATGTGGCAAAGGGTG
TCGAAAAAGAACTTTTCGGTTATAAATTGAATAACAAAATGGTTGAAACGAAACAAACTTACAAAAGCGCAATCAATGCC
AAGTGTCAATCAAACGAATGCCAAAAAGCACTTCAACAAACAGCCTGTAATGCCGGGGGCGGTTGGACTGATTTACTTGA
TGAAAATGAATACGAAATCACTCATTTGCAATTTAATTTTATTGCAGAAAGAAAAGGCATTGAAATTCAGCTTGCCGGTA
ATTTAAAAGGGAATTCTACAATTCAGTATGAAACATCAATGGTGGTGGCATTGTGGAATCAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

65.517

99.145

0.65

Multiple sequence alignment