Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   FEE42_RS00255 Genome accession   NZ_CP040863
Coordinates   56199..56714 (+) Length   171 a.a.
NCBI ID   WP_059365383.1    Uniprot ID   A0A9X8VZT1
Organism   Rodentibacter caecimuris strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51199..61714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS00235 (FEE42_00235) ybeY 52243..52710 (+) 468 WP_164027415.1 rRNA maturation RNase YbeY -
  FEE42_RS00240 (FEE42_00240) - 52766..53551 (+) 786 WP_164027416.1 Cof-type HAD-IIB family hydrolase -
  FEE42_RS00245 (FEE42_00245) - 53600..54988 (-) 1389 WP_059365385.1 cytochrome-c peroxidase -
  FEE42_RS00250 (FEE42_00250) suhB 55196..55999 (-) 804 WP_059365384.1 inositol-1-monophosphatase -
  FEE42_RS00255 (FEE42_00255) comN 56199..56714 (+) 516 WP_059365383.1 type II secretion system protein Machinery gene
  FEE42_RS00260 (FEE42_00260) comO 56719..57423 (+) 705 WP_059365382.1 PulJ/GspJ family protein Machinery gene
  FEE42_RS00265 (FEE42_00265) comP 57423..58112 (+) 690 WP_059365381.1 DUF2572 family protein Machinery gene
  FEE42_RS00270 (FEE42_00270) comQ 58105..58392 (+) 288 WP_059365380.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19619.74 Da        Isoelectric Point: 8.9670

>NTDB_id=367712 FEE42_RS00255 WP_059365383.1 56199..56714(+) (comN) [Rodentibacter caecimuris strain G1]
MHKGLTLVELLIGLAIISIALSFSLPLWQTDNPKTILAKEQHRLYLFLRQIQGRAENSSEIWFILANRHPTTKQWCMTAQ
VKNDKRCDCFAPTSCPKEVYAHFYYPYFDQKTMIISPKIYPTEMARFNGIRNTIDSNCFLLQAGDESTLFSFFNVGSLKL
KPNQSASACTR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=367712 FEE42_RS00255 WP_059365383.1 56199..56714(+) (comN) [Rodentibacter caecimuris strain G1]
ATGCACAAAGGTTTAACATTAGTGGAATTATTAATTGGTTTGGCAATTATCAGTATTGCATTAAGTTTCAGCCTCCCGCT
CTGGCAAACCGATAATCCCAAGACAATTTTAGCAAAAGAGCAGCATCGCCTTTATTTATTTTTGCGACAGATTCAGGGGC
GGGCGGAAAATTCTTCTGAAATTTGGTTTATTTTGGCAAATCGTCATCCTACGACAAAGCAATGGTGTATGACGGCTCAG
GTCAAAAATGACAAACGCTGCGATTGTTTTGCTCCGACAAGCTGTCCAAAAGAGGTTTATGCGCATTTTTACTATCCATA
TTTCGATCAGAAAACGATGATTATTAGCCCCAAAATTTATCCTACGGAAATGGCTCGTTTTAATGGCATACGCAATACGA
TAGATTCCAACTGTTTTTTATTACAAGCAGGTGATGAGAGCACATTATTTTCCTTTTTTAATGTGGGGAGTTTAAAGTTG
AAACCTAATCAGTCCGCCAGTGCGTGTACGAGATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

72.781

98.83

0.719

Multiple sequence alignment