Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FEE42_RS05905 Genome accession   NZ_CP040863
Coordinates   1156597..1157814 (+) Length   405 a.a.
NCBI ID   WP_059365851.1    Uniprot ID   A0A9X8VZ47
Organism   Rodentibacter caecimuris strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1151597..1162814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS05880 (FEE42_05855) - 1152190..1152987 (-) 798 WP_164027910.1 sulfite exporter TauE/SafE family protein -
  FEE42_RS05885 (FEE42_05860) rppH 1152991..1153572 (-) 582 WP_059365847.1 RNA pyrophosphohydrolase -
  FEE42_RS05890 (FEE42_05865) ampD 1154080..1154649 (-) 570 WP_164027911.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FEE42_RS05895 (FEE42_05870) pilA 1154773..1155210 (+) 438 WP_059365849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  FEE42_RS05900 (FEE42_05875) pilB 1155207..1156595 (+) 1389 WP_059365850.1 GspE/PulE family protein Machinery gene
  FEE42_RS05905 (FEE42_05880) pilC 1156597..1157814 (+) 1218 WP_059365851.1 type II secretion system F family protein Machinery gene
  FEE42_RS05910 (FEE42_05885) pilD 1157814..1158503 (+) 690 WP_164027912.1 prepilin peptidase Machinery gene
  FEE42_RS05915 (FEE42_05890) coaE 1158513..1159133 (+) 621 WP_164027913.1 dephospho-CoA kinase -
  FEE42_RS05920 (FEE42_05895) yacG 1159126..1159332 (+) 207 WP_164027914.1 DNA gyrase inhibitor YacG -
  FEE42_RS05925 (FEE42_05900) - 1159329..1159601 (+) 273 WP_059365855.1 GNAT family N-acetyltransferase -
  FEE42_RS05930 (FEE42_05905) rhlB 1159702..1160949 (+) 1248 WP_164027915.1 ATP-dependent RNA helicase RhlB -
  FEE42_RS05935 (FEE42_05910) accC 1161013..1162359 (-) 1347 WP_059365857.1 acetyl-CoA carboxylase biotin carboxylase subunit -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 46068.57 Da        Isoelectric Point: 10.2398

>NTDB_id=367724 FEE42_RS05905 WP_059365851.1 1156597..1157814(+) (pilC) [Rodentibacter caecimuris strain G1]
MAKKLFYYRAHNALKQMQRGSIIADSMQQAQFRLMNRGLTNVKLQKNWQLNSKPKKTEISALLNQLTTLLQSAIPLKHSL
QILQQNCTQLALNAWLEQLLKSIEAGLSFSQSIEQQGKYLTQQEIQLIQVGEMTGKLATVCSKIASHRHQSLTLQRRLQK
IMLYPAMVLGISLLLTLALLLFIVPQFAEMYQGNNTELPALTSLLLSTSNLLKEDIGILLFFTLIFILFYQLKLKHSSHF
QRKKAQIIAVMPIFGNIQQLSRLVNFSQSLYIMLQAGVPLNQALHSFLPRIQTWQTKKAILSDQILDTEVRSILHWVSQG
YAFSDSISSHLFPMEAQQMLQIGEKSGKLALMLQHIAENYQEKLNHQIDLLSQMLEPMMMVIIGSLIGIIMMGMYLPIFN
MGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=367724 FEE42_RS05905 WP_059365851.1 1156597..1157814(+) (pilC) [Rodentibacter caecimuris strain G1]
ATGGCAAAAAAACTTTTTTACTACCGGGCACATAATGCCCTAAAGCAAATGCAAAGAGGCTCAATCATTGCCGACTCAAT
GCAACAAGCGCAATTTCGATTGATGAACCGAGGGCTCACCAATGTCAAATTACAAAAAAACTGGCAACTCAACAGTAAAC
CGAAAAAAACAGAAATTAGTGCATTATTGAATCAACTTACCACGCTTCTACAATCTGCGATTCCGCTTAAACACAGTTTA
CAAATTTTGCAACAAAATTGTACCCAACTTGCTTTAAATGCCTGGCTGGAACAGCTGTTAAAATCTATTGAAGCCGGATT
ATCTTTTTCCCAAAGTATTGAGCAACAAGGCAAGTATCTTACCCAACAAGAAATTCAATTAATTCAGGTTGGCGAAATGA
CGGGAAAACTGGCAACTGTTTGCAGCAAAATTGCATCACATCGCCATCAATCCCTAACACTACAACGCAGATTACAAAAA
ATTATGCTGTATCCCGCTATGGTATTGGGAATCTCTTTATTGCTAACACTTGCACTTTTACTTTTTATCGTGCCGCAATT
TGCCGAAATGTATCAAGGTAATAATACTGAGTTACCCGCACTCACTTCGCTGTTACTTTCCACCTCAAATCTGCTTAAAG
AAGATATCGGCATCTTGCTATTTTTTACGCTGATATTCATCCTGTTTTATCAATTAAAATTAAAGCATTCCTCACACTTT
CAACGGAAAAAAGCTCAAATCATTGCTGTGATGCCGATTTTTGGCAATATTCAGCAGCTCTCCCGTTTAGTAAATTTCAG
CCAAAGTCTATACATTATGTTACAAGCCGGTGTGCCACTTAATCAGGCTTTACATAGTTTTCTACCACGCATACAAACTT
GGCAAACTAAAAAAGCCATCTTGAGTGATCAAATTCTTGATACTGAAGTTAGGTCAATTTTACATTGGGTTTCACAAGGT
TATGCCTTTTCAGATAGCATAAGTAGCCACCTATTTCCTATGGAGGCACAACAAATGCTGCAAATCGGAGAAAAAAGTGG
AAAACTGGCTTTGATGTTACAACATATTGCAGAAAACTATCAGGAAAAACTCAATCATCAAATTGACCTCCTTTCTCAAA
TGTTAGAACCAATGATGATGGTGATTATTGGAAGCCTCATAGGCATCATTATGATGGGAATGTATTTACCGATTTTTAAT
ATGGGATCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(63-185)

Type II secretion system (T2SS), protein F (T2SSF)

(266-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

78.765

100

0.788
  pilC Haemophilus influenzae 86-028NP

78.025

100

0.78
  pilC Glaesserella parasuis strain SC1401

38.25

98.765

0.378

Multiple sequence alignment