Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   FEE42_RS07405 Genome accession   NZ_CP040863
Coordinates   1470449..1471816 (-) Length   455 a.a.
NCBI ID   WP_059368781.1    Uniprot ID   A0A9X8VZE3
Organism   Rodentibacter caecimuris strain G1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1465449..1476816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS07380 (FEE42_07365) - 1465722..1466588 (-) 867 WP_059366121.1 VirK/YbjX family protein -
  FEE42_RS07385 (FEE42_07370) yihA 1466693..1467310 (+) 618 WP_059366122.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FEE42_RS07390 (FEE42_07375) comM 1467425..1468951 (+) 1527 WP_164028034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FEE42_RS07395 (FEE42_07380) nfuA 1469063..1469647 (-) 585 WP_059368782.1 Fe-S biogenesis protein NfuA -
  FEE42_RS07400 (FEE42_07385) - 1469748..1470407 (-) 660 WP_059368897.1 DNA utilization protein GntX -
  FEE42_RS07405 (FEE42_07390) comE 1470449..1471816 (-) 1368 WP_059368781.1 type IV pilus secretin PilQ Machinery gene
  FEE42_RS07410 (FEE42_07395) - 1471825..1472214 (-) 390 WP_164028035.1 pilus assembly protein PilP -
  FEE42_RS07415 (FEE42_07400) - 1472225..1472737 (-) 513 WP_164028036.1 hypothetical protein -
  FEE42_RS07420 (FEE42_07405) - 1472750..1473262 (-) 513 WP_059368778.1 PilN domain-containing protein -
  FEE42_RS07425 (FEE42_07410) - 1473249..1474076 (-) 828 WP_237184409.1 pilus assembly protein PilM -
  FEE42_RS07430 (FEE42_07415) - 1474181..1476802 (+) 2622 WP_164028037.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50006.61 Da        Isoelectric Point: 6.6571

>NTDB_id=367734 FEE42_RS07405 WP_059368781.1 1470449..1471816(-) (comE) [Rodentibacter caecimuris strain G1]
MKVWIKKCGLFFLCFCCGNEVAAEFKENQVFSIRLKQAPMVSALQELALVQGANLIIDDALDDSLSLQLDNVDFDRVLRS
VAKMKGLSLRLEDDIYYLGKKDVVFSETSLQPTENEVLANIKQIEPSLVSKTIKLNFAKASEVMKSLTTGSGSLLSASGS
IAFDDRSNLLIIQDDAKSVKNLVKLIAELDKPIEQIAIEARIVTITDESLKELGVRWGIFTPTENAHRVGGSLAANGFAN
IADNLNINFATSTTPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVKGKSDIQT
VEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRISYGQQNNEIVSIDKQEINTQVFAKDGETIVLGGVFHDTITKGI
DKVPVLGDIPLVKHLFSKESERHQKRELVIFVTPRILKQGESLKGLKQKTADKRK

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=367734 FEE42_RS07405 WP_059368781.1 1470449..1471816(-) (comE) [Rodentibacter caecimuris strain G1]
ATGAAAGTGTGGATAAAAAAGTGCGGTCTCTTTTTTCTGTGTTTTTGTTGTGGCAATGAGGTAGCGGCAGAGTTTAAGGA
AAATCAGGTTTTTTCTATTCGTTTGAAACAGGCGCCGATGGTGTCAGCCTTACAAGAACTTGCTTTAGTGCAAGGAGCTA
ATTTAATTATTGATGATGCATTGGACGATTCGCTTTCATTACAATTAGATAATGTAGATTTTGATCGTGTATTGCGTTCT
GTTGCAAAAATGAAAGGGCTTTCGTTACGGCTGGAAGATGATATTTATTATTTAGGAAAAAAGGACGTGGTTTTCTCTGA
AACGTCATTGCAGCCCACAGAGAACGAAGTGTTGGCGAACATAAAGCAGATTGAACCTTCTCTTGTGAGCAAAACAATTA
AATTGAATTTTGCGAAAGCGTCAGAGGTGATGAAATCGCTCACCACCGGTAGTGGGTCTTTATTGTCTGCTTCAGGAAGT
ATTGCTTTTGATGATCGCAGTAATTTATTAATCATTCAAGATGACGCAAAATCCGTTAAAAATCTGGTAAAACTCATTGC
TGAGTTAGATAAACCTATTGAACAAATCGCTATTGAAGCTCGCATTGTAACCATTACGGATGAAAGTCTTAAAGAATTAG
GTGTGCGTTGGGGAATTTTTACGCCAACGGAGAATGCGCATCGGGTGGGCGGTAGCCTTGCTGCTAACGGTTTTGCCAAT
ATAGCGGATAATTTAAATATCAATTTTGCAACGAGTACTACTCCTGCTGGTTCTCTCGCATTGCAAGTGGCGAAAATTAA
CGGGAGATTATTGGATTTGGAATTAACCGCACTTGAACGTGAAAATAACGTAGAGATTATAGCCAGTCCAAGGTTACTGA
CAACGAATAAAAAAAGTGCAAGTATTAAGCAAGGTACTGAGATTCCTTATGTCGTCAAGGGCAAAAGTGATATACAAACC
GTTGAATTTCGTGAGGCTGTATTAGGCTTAGAAGTGACACCGCATATTTCCAAGGATAACAATATCCTACTTGATTTATT
GGTTAGTCAAAACTCACCGGGTAATCGAATATCCTATGGGCAACAAAATAACGAGATTGTGTCCATCGATAAACAGGAAA
TTAATACTCAGGTTTTTGCGAAAGATGGCGAAACCATCGTATTGGGCGGGGTGTTTCATGACACGATCACGAAAGGGATT
GATAAAGTTCCAGTATTGGGCGATATCCCACTGGTAAAGCATTTATTTAGTAAAGAAAGTGAACGTCACCAAAAACGTGA
ATTGGTCATTTTTGTTACGCCGCGTATTTTAAAACAAGGCGAAAGTTTAAAAGGATTGAAACAAAAAACGGCAGATAAAA
GGAAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(131-195)

Bacterial type II and III secretion system protein (Secretin)

(277-438)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Haemophilus influenzae Rd KW20

71.053

100

0.712
  comE Haemophilus influenzae 86-028NP

70.395

100

0.705
  comE Glaesserella parasuis strain SC1401

53.409

96.703

0.516
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

42.019

93.626

0.393
  pilQ Vibrio cholerae strain A1552

42.019

93.626

0.393
  pilQ Vibrio campbellii strain DS40M4

41.339

95.165

0.393

Multiple sequence alignment