Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   FEE42_RS07390 Genome accession   NZ_CP040863
Coordinates   1467425..1468951 (+) Length   508 a.a.
NCBI ID   WP_164028034.1    Uniprot ID   -
Organism   Rodentibacter caecimuris strain G1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1462425..1473951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS07370 (FEE42_07355) - 1463013..1463756 (-) 744 WP_164028033.1 MIP/aquaporin family protein -
  FEE42_RS07375 (FEE42_07360) glpK 1464144..1465655 (+) 1512 WP_059366120.1 glycerol kinase GlpK -
  FEE42_RS07380 (FEE42_07365) - 1465722..1466588 (-) 867 WP_059366121.1 VirK/YbjX family protein -
  FEE42_RS07385 (FEE42_07370) yihA 1466693..1467310 (+) 618 WP_059366122.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  FEE42_RS07390 (FEE42_07375) comM 1467425..1468951 (+) 1527 WP_164028034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  FEE42_RS07395 (FEE42_07380) nfuA 1469063..1469647 (-) 585 WP_059368782.1 Fe-S biogenesis protein NfuA -
  FEE42_RS07400 (FEE42_07385) - 1469748..1470407 (-) 660 WP_059368897.1 DNA utilization protein GntX -
  FEE42_RS07405 (FEE42_07390) comE 1470449..1471816 (-) 1368 WP_059368781.1 type IV pilus secretin PilQ Machinery gene
  FEE42_RS07410 (FEE42_07395) - 1471825..1472214 (-) 390 WP_164028035.1 pilus assembly protein PilP -
  FEE42_RS07415 (FEE42_07400) - 1472225..1472737 (-) 513 WP_164028036.1 hypothetical protein -
  FEE42_RS07420 (FEE42_07405) - 1472750..1473262 (-) 513 WP_059368778.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56002.30 Da        Isoelectric Point: 9.6541

>NTDB_id=367732 FEE42_RS07390 WP_164028034.1 1467425..1468951(+) (comM) [Rodentibacter caecimuris strain G1]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALINAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILVASDQLDGSRLKQLEFVGELALTGHLRGIHGVIPAILAAQKSKRELVIAQQNANEASLVSEQNTYFAQTL
LDVVQFLNNQKTLPLATELSHESAVNFHHNYVDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTTLLPE
MSSQEAIETASVTSLVHNELNLHNWKQRPFRAPHHSTSLPALVGGGTIPKPGEISLAHNGVLFLDELPEFERKVLDALRQ
PLESGEIVISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQHS
DNRGETSEQVREKVLRVREIQLARAGKINAYLTSKEIERDCKLDEKEALFLENTLNKLGLSVRAYHRILKVSRTIADLNG
EKQISQLHLAEALGYRAMDRLLQKLSHA

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=367732 FEE42_RS07390 WP_164028034.1 1467425..1468951(+) (comM) [Rodentibacter caecimuris strain G1]
ATGTCCCTTGCCATCGTTTATAGTCGAGCCTCCATGGGCGTACAAGCCCCGCTTGTTACGATTGAAGTCCATTTAAGTAA
CGGGAAACCCGGATTTACACTCGTGGGATTACCTGAAAAAACAGTCAAGGAAGCGCAAGACCGCGTGCGTAGCGCGTTAA
TCAACGCACAATTTAAATATCCGGCAAAACGTATCACTGTAAATCTCGCCCCGGCGGATTTACCCAAGGAAGGCGGGCGA
TTTGATTTACCCATTGCTATTGGAATTCTTGTAGCATCCGATCAATTAGACGGTAGCCGTTTAAAACAACTTGAGTTTGT
CGGAGAATTGGCTCTAACAGGCCATCTGAGAGGGATTCACGGCGTCATTCCGGCTATTCTCGCCGCACAAAAATCCAAAC
GTGAACTGGTTATTGCTCAGCAAAATGCGAACGAAGCCTCATTAGTTTCGGAGCAAAATACCTATTTTGCTCAAACTTTA
CTTGATGTTGTGCAATTTCTTAATAATCAGAAAACACTGCCTCTTGCGACGGAATTAAGCCATGAAAGTGCGGTTAATTT
CCATCATAATTACGTTGATTTAACCGATATTATCGGACAACAACATGCTAAGCGGGCTCTTACTATTGCCGCTGCCGGAC
AACACAATTTGCTTTTTCTTGGCCCTCCGGGAACCGGTAAAACGATGCTGGCAAGTCGTTTAACGACACTGTTGCCGGAA
ATGAGCTCTCAGGAAGCCATTGAAACCGCCTCTGTAACAAGCCTCGTACACAATGAATTAAATCTCCATAATTGGAAACA
ACGCCCATTTCGGGCACCACATCATAGTACCTCTCTACCGGCATTAGTCGGTGGAGGCACTATTCCCAAACCGGGAGAAA
TTTCCTTGGCACATAATGGCGTACTGTTTTTAGACGAATTACCGGAATTTGAGCGAAAAGTACTTGATGCCCTGCGTCAA
CCGCTAGAAAGTGGCGAAATTGTTATCTCACGAGCCAATGCCAAAATTCAATTTCCTGCACGCTTTCAATTGGTTGCAGC
AATGAATCCCAGCCCAACCGGACATTATACCGGCACACATAACCGCACTTCACCCCAACAAATCATGCGCTATTTAAACC
GCCTATCCGGGCCATTTTTAGATAGGTTTGATTTATCTATTGAAGTACCGTTACTACCACAGGGGAGTTTACAACATTCG
GACAATCGAGGCGAAACCAGTGAACAAGTGCGGGAAAAAGTATTAAGAGTACGGGAAATTCAATTAGCCCGAGCCGGAAA
AATCAATGCTTATTTAACCAGTAAAGAGATTGAACGGGATTGTAAATTAGATGAAAAAGAAGCGTTATTTCTTGAAAACA
CATTAAATAAACTCGGGCTTTCCGTACGAGCCTACCATCGTATTCTGAAAGTCTCACGCACCATTGCCGATCTTAATGGA
GAAAAACAAATTTCCCAACTTCATTTAGCAGAAGCATTGGGCTACCGTGCAATGGATCGATTACTACAAAAATTAAGCCA
TGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

89.567

100

0.896
  comM Glaesserella parasuis strain SC1401

78.458

99.606

0.781
  comM Vibrio cholerae strain A1552

66.403

99.606

0.661
  comM Vibrio campbellii strain DS40M4

65.02

99.606

0.648
  comM Legionella pneumophila str. Paris

51.69

99.016

0.512
  comM Legionella pneumophila strain ERS1305867

51.69

99.016

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.082

100

0.476

Multiple sequence alignment