Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   FEE42_RS00190 Genome accession   NZ_CP040863
Coordinates   39759..42140 (+) Length   793 a.a.
NCBI ID   WP_164028784.1    Uniprot ID   -
Organism   Rodentibacter caecimuris strain G1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 34759..47140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS00165 (FEE42_00165) - 35285..35638 (+) 354 WP_059365400.1 DUF496 family protein -
  FEE42_RS00170 (FEE42_00170) - 36017..36997 (+) 981 WP_164027407.1 SEL1-like repeat protein -
  FEE42_RS00175 (FEE42_00175) folK 37040..37525 (-) 486 WP_164027408.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  FEE42_RS00180 (FEE42_00180) pcnB 37527..38966 (-) 1440 WP_164027409.1 polynucleotide adenylyltransferase PcnB -
  FEE42_RS00185 (FEE42_00185) dksA 39058..39495 (-) 438 WP_059365396.1 RNA polymerase-binding protein DksA -
  FEE42_RS00190 (FEE42_00190) rec2 39759..42140 (+) 2382 WP_164028784.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FEE42_RS00195 (FEE42_00195) msbA 42183..43931 (+) 1749 WP_164027410.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FEE42_RS00200 (FEE42_00200) lpxK 44057..45055 (+) 999 WP_059365394.1 tetraacyldisaccharide 4'-kinase -
  FEE42_RS00205 (FEE42_00205) - 45048..45227 (+) 180 WP_059365393.1 Trm112 family protein -
  FEE42_RS00210 (FEE42_00210) kdsB 45279..46043 (+) 765 WP_164027411.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 793 a.a.        Molecular weight: 90426.08 Da        Isoelectric Point: 9.9901

>NTDB_id=367711 FEE42_RS00190 WP_164028784.1 39759..42140(+) (rec2) [Rodentibacter caecimuris strain G1]
MPLNLFTLAISLICASLSLIFLPDFMLIGWKPTLLCHLIFTLTAFFFYWFKKIWLFHCCITLNVVILAFGYTHSVALNLL
QQADEILPEKQNLVLQIERVLHQQEYQTVIARTILNNKEQRIFLNWKAQAKPFLGEKWQGEVSVKPLSARLNFGGFDRQQ
WYFSQGVTATGHLKSAVKIDSNFSWREKKLWQALKQTETLSLQGLLIALAFGERAWLDQTTWQIYQQTNTGHLIAISGLH
IGLAMGIGLLLVRLAQFFLPTKYIQPVFPLWLGALFALFYAYLAGFNVPTFRAISALLLVLIIQSQRRYYSAFRLFILII
AFLLLCDPLMPLSTSFWLSIGAVFCLIIWYRYLPLSLFQWRFNPFSPKVRWILGLFHLQFGLLLLFTPLQLILFNGISLS
GFFANLLAVPLYSFFLIPVILFAVLSNGALYSWQLANSLAEGITQLIAFFQGNWLSVSLNLSLILTAFFSLFFLLIIVGI
YREKSLLQKAWKIKSAKYFTLETNRALPTIYKKQAVWGSVGIAVSSLLFVAIRQYQKPIWQLDTLDVGQGLATLIVKNSR
AILYDTGSAWQGGSMAELEILPYLRREGISLDKLILSHDDNDHSGGAKAILRNYPNAEFITSSEKSYGEIHRDFCIAGKE
WEWQGIHFRILSPQKVVIRADNPNSCVILLEDGKYRVLLTGDAETKNEHIFARTLGKINVLQVGHHGSKTSTGEILVSHT
KPDFAIISSGRWNPWKFPHPTVIERLKRHQSAVENTAVSGQIRVSFYDNGWKISRQKNAFSPWYARPIGFLPE

Nucleotide


Download         Length: 2382 bp        

>NTDB_id=367711 FEE42_RS00190 WP_164028784.1 39759..42140(+) (rec2) [Rodentibacter caecimuris strain G1]
ATGCCTTTAAATTTGTTTACCTTGGCAATAAGTCTGATTTGTGCTTCGTTATCGTTAATATTCCTACCCGATTTTATGCT
GATCGGTTGGAAACCAACGTTACTATGTCATTTAATTTTCACTCTGACCGCCTTTTTCTTCTATTGGTTCAAAAAAATAT
GGCTGTTTCATTGTTGCATCACATTGAATGTTGTTATTTTGGCATTCGGTTATACACATTCTGTTGCATTGAATTTATTA
CAACAAGCCGATGAAATTTTGCCTGAAAAACAAAATTTAGTTTTACAAATTGAAAGGGTGTTACATCAGCAGGAATACCA
AACGGTGATTGCCCGTACGATACTAAATAACAAGGAACAACGAATTTTTCTTAATTGGAAAGCGCAAGCAAAGCCTTTTT
TAGGCGAAAAATGGCAAGGCGAAGTTTCTGTCAAACCACTTTCTGCAAGATTAAATTTTGGAGGATTTGATCGCCAACAA
TGGTATTTTTCTCAAGGTGTGACGGCGACGGGGCATTTAAAAAGTGCGGTCAAAATCGACAGCAATTTTTCATGGCGTGA
AAAAAAATTATGGCAGGCATTAAAACAAACTGAAACGCTTTCTTTACAAGGTTTATTGATCGCCTTAGCTTTTGGGGAAC
GGGCATGGTTGGATCAAACGACATGGCAAATTTATCAACAGACGAATACGGGACATTTAATTGCGATTTCCGGTTTACAT
ATCGGATTAGCTATGGGAATAGGGTTGTTATTGGTCAGATTGGCACAGTTTTTCCTGCCGACAAAGTATATTCAACCTGT
TTTTCCGCTGTGGTTAGGGGCTTTATTTGCCTTATTTTATGCTTATCTGGCTGGCTTTAATGTTCCCACTTTTCGGGCAA
TTTCCGCTTTGCTTTTAGTTTTAATAATACAATCACAACGCCGTTATTATTCGGCTTTCCGGCTTTTTATCTTAATTATC
GCCTTTCTTCTACTGTGTGATCCTCTTATGCCTCTTTCAACGAGTTTTTGGCTTTCGATAGGGGCGGTATTTTGTCTCAT
CATTTGGTATCGTTACCTACCTCTTTCTTTGTTTCAATGGCGGTTTAACCCTTTTTCACCTAAAGTGCGGTGGATTTTGG
GTTTATTTCATTTGCAGTTCGGTTTATTGCTGTTATTTACGCCGTTACAACTTATTTTATTTAATGGAATATCACTGAGC
GGTTTTTTTGCTAATTTGCTGGCCGTCCCCTTATATAGTTTTTTTCTTATCCCTGTGATCTTATTTGCCGTGCTAAGCAA
TGGGGCGCTGTATTCTTGGCAATTGGCAAATAGTTTGGCAGAGGGTATTACGCAACTTATTGCCTTTTTTCAGGGAAACT
GGCTGAGTGTCTCATTGAATTTATCACTCATTTTAACCGCCTTTTTCAGCCTGTTTTTTCTTCTGATTATTGTTGGAATC
TACCGTGAAAAAAGCCTTTTGCAAAAGGCTTGGAAAATAAAATCAGCGAAATATTTTACATTAGAGACTAATAGAGCATT
GCCGACAATTTACAAAAAACAAGCCGTTTGGGGTTCTGTCGGTATTGCCGTTTCATCTTTATTGTTTGTTGCGATTCGAC
AATATCAGAAACCGATTTGGCAGTTGGATACCTTAGATGTGGGGCAAGGGCTGGCAACTTTAATTGTAAAAAATAGTCGG
GCGATTTTGTACGATACCGGTTCGGCGTGGCAAGGCGGTTCAATGGCCGAATTGGAAATTTTGCCTTATTTACGGCGAGA
AGGAATAAGTTTGGATAAACTCATTTTAAGCCACGACGATAACGATCATTCCGGTGGGGCAAAGGCCATTTTAAGAAACT
ATCCAAATGCAGAATTCATCACTTCGTCTGAAAAAAGCTATGGTGAAATTCATCGGGATTTTTGTATTGCCGGAAAAGAA
TGGGAATGGCAGGGGATTCATTTTCGTATTCTTTCACCGCAGAAAGTCGTTATACGGGCGGATAATCCGAATTCTTGTGT
CATTTTATTAGAAGATGGCAAATATCGTGTCTTGCTTACCGGCGATGCAGAGACGAAAAACGAGCACATTTTTGCCCGCA
CTTTAGGCAAAATCAATGTGTTACAAGTCGGACATCATGGTAGCAAAACTTCTACAGGCGAGATTTTGGTTTCACACACC
AAACCGGATTTTGCGATTATTTCAAGCGGGCGTTGGAATCCTTGGAAATTTCCCCATCCAACCGTTATTGAACGTCTTAA
ACGACATCAAAGTGCGGTCGAAAATACGGCTGTTTCGGGGCAAATTCGAGTTAGTTTTTATGATAACGGATGGAAAATCT
CACGCCAAAAAAATGCTTTTTCGCCTTGGTATGCCCGCCCGATTGGATTCTTACCCGAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-176)

Competence protein (Competence)

(209-478)

Metallo-beta-lactamase superfamily (Lactamase_B)

(546-716)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

63.522

100

0.637

Multiple sequence alignment