Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FEE42_RS07525 Genome accession   NZ_CP040863
Coordinates   1492677..1493339 (-) Length   220 a.a.
NCBI ID   WP_069029757.1    Uniprot ID   A0A1B3JG31
Organism   Rodentibacter caecimuris strain G1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1487677..1498339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEE42_RS07525 (FEE42_07510) sxy/tfoX 1492677..1493339 (-) 663 WP_069029757.1 TfoX/Sxy family DNA transformation protein Regulator
  FEE42_RS07530 (FEE42_07515) recA 1493841..1494893 (+) 1053 WP_059368766.1 recombinase RecA Machinery gene
  FEE42_RS07535 (FEE42_07520) crcB 1495327..1495710 (-) 384 WP_164028045.1 fluoride efflux transporter CrcB -
  FEE42_RS07540 (FEE42_07525) - 1495710..1496528 (-) 819 WP_164028046.1 Cof-type HAD-IIB family hydrolase -
  FEE42_RS07545 (FEE42_07530) tuf 1496680..1497864 (-) 1185 WP_059368590.1 elongation factor Tu -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25516.12 Da        Isoelectric Point: 10.1164

>NTDB_id=367735 FEE42_RS07525 WP_069029757.1 1492677..1493339(-) (sxy/tfoX) [Rodentibacter caecimuris strain G1]
MAILNIKDKHIDDICMMTNELIGNVTSKNLFTGYGLFYNKELMFGLWLNGKFYLQAKDELSNRLINSGCVAFTKNEVDAK
FVLSDYYCLTKDILGDRVLLRKLLMLSIKQIQDRKNEIALSKANRLKDLPNLSIKYERMLKKVGIHDVNTLKIVGAENAI
VRLRKFGIPATLNTYWKLACALLNKNSEMLNRQQKEILLKKLNKVLYEAGFRRYRKIDDE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=367735 FEE42_RS07525 WP_069029757.1 1492677..1493339(-) (sxy/tfoX) [Rodentibacter caecimuris strain G1]
ATGGCAATATTAAACATTAAAGATAAACATATTGATGACATTTGTATGATGACTAATGAATTAATCGGAAATGTGACTTC
GAAGAATTTATTCACCGGTTACGGGTTGTTTTACAATAAAGAACTTATGTTCGGTTTATGGTTGAATGGAAAGTTTTACC
TTCAAGCAAAAGATGAATTATCTAACCGATTGATAAATTCAGGATGTGTGGCTTTCACAAAAAACGAAGTTGATGCCAAG
TTTGTTTTGTCGGATTACTATTGTCTTACTAAGGATATTCTAGGTGATCGGGTTTTACTGCGTAAATTGCTTATGCTTTC
TATTAAACAAATTCAGGATAGAAAGAATGAGATTGCCTTATCAAAGGCAAACCGCTTAAAAGATCTTCCTAATCTCTCCA
TAAAATATGAACGAATGTTAAAGAAGGTAGGTATTCATGACGTCAACACACTAAAGATAGTGGGCGCTGAGAATGCGATT
GTCAGGTTAAGGAAATTTGGAATACCGGCTACTTTAAACACTTATTGGAAACTAGCTTGTGCATTACTGAATAAAAATAG
TGAAATGTTAAATAGACAGCAAAAGGAAATACTACTGAAGAAGCTAAATAAAGTCTTATATGAAGCGGGGTTTAGAAGAT
ATAGAAAGATTGATGATGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(22-110)

TfoX C-terminal domain (TfoX_C)

(123-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3JG31

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

56.221

98.636

0.555

Multiple sequence alignment