Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FEE42_RS09835 | Genome accession | NZ_CP040863 |
| Coordinates | 2008554..2009054 (-) | Length | 166 a.a. |
| NCBI ID | WP_135969522.1 | Uniprot ID | - |
| Organism | Rodentibacter caecimuris strain G1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2003554..2014054
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEE42_RS09815 (FEE42_09860) | - | 2004159..2004713 (+) | 555 | WP_059368872.1 | TadE/TadG family type IV pilus assembly protein | - |
| FEE42_RS09820 (FEE42_09865) | tadF | 2004691..2005242 (+) | 552 | WP_077583138.1 | tight adherence pilus pseudopilin TadF | - |
| FEE42_RS09825 (FEE42_09870) | - | 2005258..2006841 (+) | 1584 | WP_059368088.1 | pilus assembly protein TadG-related protein | - |
| FEE42_RS09830 (FEE42_09875) | - | 2007196..2007696 (+) | 501 | WP_059368871.1 | YbhB/YbcL family Raf kinase inhibitor-like protein | - |
| FEE42_RS09835 (FEE42_09880) | ssb | 2008554..2009054 (-) | 501 | WP_135969522.1 | single-stranded DNA-binding protein | Machinery gene |
| FEE42_RS09840 (FEE42_09885) | uvrA | 2009207..2012038 (+) | 2832 | WP_077581615.1 | excinuclease ABC subunit UvrA | - |
| FEE42_RS09845 (FEE42_09890) | - | 2012126..2013451 (-) | 1326 | WP_164028382.1 | GntP family permease | - |
Sequence
Protein
Download Length: 166 a.a. Molecular weight: 18774.52 Da Isoelectric Point: 4.9771
>NTDB_id=367740 FEE42_RS09835 WP_135969522.1 2008554..2009054(-) (ssb) [Rodentibacter caecimuris strain G1]
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREITEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGSRNQNAGGYSAPDMGQSSPQPSYQTSYNSNNQPSRPTQQQTSQAEPPMDGF
DDDIPF
MAGVNKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREITEWHRIVFYRRQAEICGEYLRKGSQVYVEG
RLRTRKWQDQNGQDRYTTEIQGDVMQMLGSRNQNAGGYSAPDMGQSSPQPSYQTSYNSNNQPSRPTQQQTSQAEPPMDGF
DDDIPF
Nucleotide
Download Length: 501 bp
>NTDB_id=367740 FEE42_RS09835 WP_135969522.1 2008554..2009054(-) (ssb) [Rodentibacter caecimuris strain G1]
ATGGCAGGAGTAAATAAAGTTATTATTGTGGGGCATTTGGGCAATGATCCCGAAATTCGCACAATGCCGAATGGTGATGC
CGTTGCCAATATTAGTGTCGCAACCAGCGAAAGTTGGAATGACCGTAACACGGGTGAGCGTCGCGAGATCACAGAATGGC
ACCGTATCGTGTTCTATCGTCGCCAAGCGGAAATTTGTGGCGAATACTTACGCAAAGGTTCACAAGTTTATGTAGAGGGT
CGTTTACGCACCCGCAAATGGCAAGATCAAAATGGTCAGGATCGCTATACAACAGAAATTCAAGGTGATGTGATGCAAAT
GTTAGGCAGCCGTAACCAAAATGCTGGCGGCTACAGCGCACCGGACATGGGACAAAGCAGCCCACAACCGTCTTATCAAA
CCAGTTATAATAGTAACAATCAGCCGTCTCGTCCTACACAACAGCAAACATCACAGGCTGAACCGCCAATGGACGGTTTT
GATGATGATATTCCATTCTAA
ATGGCAGGAGTAAATAAAGTTATTATTGTGGGGCATTTGGGCAATGATCCCGAAATTCGCACAATGCCGAATGGTGATGC
CGTTGCCAATATTAGTGTCGCAACCAGCGAAAGTTGGAATGACCGTAACACGGGTGAGCGTCGCGAGATCACAGAATGGC
ACCGTATCGTGTTCTATCGTCGCCAAGCGGAAATTTGTGGCGAATACTTACGCAAAGGTTCACAAGTTTATGTAGAGGGT
CGTTTACGCACCCGCAAATGGCAAGATCAAAATGGTCAGGATCGCTATACAACAGAAATTCAAGGTGATGTGATGCAAAT
GTTAGGCAGCCGTAACCAAAATGCTGGCGGCTACAGCGCACCGGACATGGGACAAAGCAGCCCACAACCGTCTTATCAAA
CCAGTTATAATAGTAACAATCAGCCGTCTCGTCCTACACAACAGCAAACATCACAGGCTGAACCGCCAATGGACGGTTTT
GATGATGATATTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
65.385 |
100 |
0.717 |
| ssb | Vibrio cholerae strain A1552 |
56.18 |
100 |
0.602 |
| ssb | Neisseria gonorrhoeae MS11 |
49.714 |
100 |
0.524 |
| ssb | Neisseria meningitidis MC58 |
49.143 |
100 |
0.518 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
35.057 |
100 |
0.367 |