92514

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) /GNAT-DUF1778
Location 419352..420118 Replicon chromosome
Accession NZ_CP025937
Organism Vibrio cholerae strain A1552

Toxin (Protein)


Gene name - Uniprot ID Q9K2P7
Locus tag C1H56_RS16770 Protein ID WP_000982260.1
Coordinates 419352..419849 (-) Length 166 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID Q9K2J6
Locus tag C1H56_RS16775 Protein ID WP_000246253.1
Coordinates 419846..420118 (-) Length 91 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1H56_RS16720 415214..415486 + 273 Protein_444 CatB-related O-acetyltransferase -
C1H56_RS16725 415657..416349 + 693 WP_001047169.1 GNAT family N-acetyltransferase -
C1H56_RS16730 416349..416750 + 402 WP_000351248.1 type II toxin-antitoxin system death-on-curing family toxin -
C1H56_RS16735 416720..416863 + 144 WP_071908341.1 DUF3265 domain-containing protein -
C1H56_RS16740 416938..417351 + 414 WP_000049417.1 VOC family protein -
C1H56_RS16745 417565..417816 + 252 WP_001250179.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
C1H56_RS16750 417806..418093 + 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin -
C1H56_RS16755 418221..418676 + 456 WP_001245327.1 GNAT family N-acetyltransferase -
C1H56_RS16760 418998..419150 + 153 WP_001884520.1 DUF645 family protein -
C1H56_RS16770 419352..419849 - 498 WP_000982260.1 GNAT family N-acetyltransferase Toxin
C1H56_RS16775 419846..420118 - 273 WP_000246253.1 DUF1778 domain-containing protein Antitoxin
C1H56_RS16780 420349..421017 + 669 WP_000043871.1 hypothetical protein -
C1H56_RS16785 421169..421456 + 288 WP_000426470.1 hypothetical protein -
C1H56_RS16790 421597..421968 + 372 WP_001164080.1 nucleotide pyrophosphohydrolase -
C1H56_RS20010 422035..422460 + 426 WP_001882332.1 DUF1778 domain-containing protein -
C1H56_RS16800 422457..422990 + 534 WP_000118351.1 GNAT family N-acetyltransferase -
C1H56_RS16810 423192..423449 + 258 WP_000861987.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
C1H56_RS16815 423437..423739 + 303 WP_000229317.1 type II toxin-antitoxin system RelE/ParE family toxin -
C1H56_RS16820 423973..424890 + 918 WP_000186333.1 alpha/beta hydrolase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 304067..433328 129261
inside Integron catB9 - 309147..432952 123805
flank IS/Tn - - 414166..415146 980


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(86-152)

Antitoxin

(7-86)


Sequences


Toxin        


Download         Length: 166 a.a.        Molecular weight: 18527.18 Da        Isoelectric Point: 8.7753

>T92514 WP_000982260.1 NZ_CP025937:c419849-419352 [Vibrio cholerae]
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG

Download         Length: 498 bp

>T92514 NZ_CP025937:c419849-419352 [Vibrio cholerae]
ATGATGAATACGGTACTTCTCGATAAAGATAAGCACGATAGGAACCGTTTCAATTGTGGCACTGAAGCACTCAACAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCCAAAAAAGACAACACCAGAACCTTCGTTTTGGAAGATGACAATAACAGTGCTT
ATATCATCGGCTTTTACACTCTGACTATGACGCCCATTGATTTGAAAGCCTTGCCCGACAAGTTACAAAAGAAGCACCAA
TCCTCAACCTCTGGAGGGCTCATTGCTCGTTTAGCTGTCGACGATAGATACAAAGGAAAAGGTTTTGGTGAGTGGCTACT
CATTGACGCTCTCAGAAAGCTACTCGCAGCCAGTGACAGTGTAGCGTTCCCTGTTGTCATTGTTGATGCCAAAGATGGTG
CAAAACATTTCTATGAGCGCTATGGGTTTCAAGCGTTTCAAGATGCCGAAAACAAACTCTTCATCACCATTGCTGATATC
AGAGCAAGCTTAGGCTAG

Antitoxin


Download         Length: 91 a.a.        Molecular weight: 9683.22 Da        Isoelectric Point: 6.2988

>AT92514 WP_000246253.1 NZ_CP025937:c420118-419846 [Vibrio cholerae]
MATTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAKLKL
ASERYESKTQ

Download         Length: 273 bp

>AT92514 NZ_CP025937:c420118-419846 [Vibrio cholerae]
ATGGCAACGACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACTCAAGATTTACTCGCTAAGGCTGCTGCTCTTGC
TGGTATGTCTAGTATTAACTCATTTGTTTTGAATGCAGCAATCGAAAAAGCAAAACAAGTCATTGAACGTGAGCAAGCTC
TAAAGCTTAGCCAAGCTGATGCCGTATTGCTGATGGAAGCTCTTGATAATCCAGCTGTAGTAAATGCAAAGCTCAAATTG
GCATCCGAACGTTATGAGAGCAAAACTCAATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A0Q0KGB1


Antitoxin

Source ID Structure
AlphaFold DB A0A0F2IC79

References