58277

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-Phd
Location 453415..453962 Replicon chromosome
Accession NZ_CP013306
Organism Vibrio cholerae strain CRC1106

Toxin (Protein)


Gene name relE Uniprot ID Q9KM92
Locus tag ASZ81_RS17040 Protein ID WP_000229317.1
Coordinates 453660..453962 (+) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9KM93
Locus tag ASZ81_RS17035 Protein ID WP_000861987.1
Coordinates 453415..453672 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ASZ81_RS16985 448444..448899 + 456 WP_001245327.1 GNAT family N-acetyltransferase -
ASZ81_RS16995 449221..449373 + 153 WP_001884520.1 DUF645 family protein -
ASZ81_RS17000 449575..450072 - 498 WP_000982260.1 GNAT family N-acetyltransferase -
ASZ81_RS17005 450069..450341 - 273 WP_000246253.1 DUF1778 domain-containing protein -
ASZ81_RS17010 450572..451240 + 669 WP_000043871.1 hypothetical protein -
ASZ81_RS17015 451392..451679 + 288 WP_000426470.1 hypothetical protein -
ASZ81_RS17020 451820..452191 + 372 WP_001164080.1 nucleotide pyrophosphohydrolase -
ASZ81_RS17025 452258..452683 + 426 WP_001882332.1 DUF1778 domain-containing protein -
ASZ81_RS17030 452680..453213 + 534 WP_000118351.1 GNAT family N-acetyltransferase -
ASZ81_RS17035 453415..453672 + 258 WP_000861987.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
ASZ81_RS17040 453660..453962 + 303 WP_000229317.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
ASZ81_RS17045 454196..455113 + 918 WP_000186333.1 alpha/beta hydrolase -
ASZ81_RS17055 455270..455659 + 390 WP_001081302.1 hypothetical protein -
ASZ81_RS17060 455795..456004 + 210 Protein_514 GNAT family N-acetyltransferase -
ASZ81_RS17065 456123..456560 + 438 WP_000503169.1 IS200/IS605-like element IS1004 family transposase -
ASZ81_RS17070 456624..456842 + 219 WP_071908318.1 GNAT family N-acetyltransferase -
ASZ81_RS17080 457017..457889 + 873 WP_000254716.1 DUF3800 domain-containing protein -
ASZ81_RS17085 458038..458637 + 600 WP_001891245.1 glutathione S-transferase N-terminal domain-containing protein -
ASZ81_RS20690 458694..458798 + 105 WP_099607150.1 acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 304741..463550 158809
inside Integron - - 309821..463174 153353
flank IS/Tn - - 456123..456560 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-69)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11726.68 Da        Isoelectric Point: 5.1972

>T58277 WP_000229317.1 NZ_CP013306:453660-453962 [Vibrio cholerae]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ

Download         Length: 303 bp

>T58277 NZ_CP013306:453660-453962 [Vibrio cholerae]
ATGGTTGAAATAATTTGGACGGAGCTGGCTCTATCCGACTTGAATGATATTGCTGAATACATCGCGCTTGAAAATGTCGT
GGCTGCTAAACAACTGGTGCAAACCGTTTTTACAAAAGTTGAACGTTTGGCCGATTTTCCAGAGTCTGGGCGCGTCCCTC
CAGAACTAGAACACCTCAATTATCGTGAAGTCGTTGTAAGTCCGTGTCGTGTTTTCTACAAGTATGATGATGCAAAGGTT
CGTATTCTTTTTGTTATGCGTGCGGAGCGAGATTTGCGTCGGTTAATGCTTACGAAACAGTAG

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9647.15 Da        Isoelectric Point: 7.3178

>AT58277 WP_000861987.1 NZ_CP013306:453415-453672 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK

Download         Length: 258 bp

>AT58277 NZ_CP013306:453415-453672 [Vibrio cholerae]
ATGAAAGTAGAACTTGTGACGTCACTAAAACGTCAGGCCACTAAGATCCTTGCCGATCTTCATGATACGAAAGAGCCAGT
ATTGATAACTGAGCACGGAAAACCGTCAGCTTACCTTATTGATGTAGACGACTATGAATTTATGCAAAATCGTTTAGCGA
TCCTGGAAGGTATTGCTCGCGGAGAGCGAGCTTTAGCGGATGGTAAAGTGGTCAGCCATCAAGATGCTAAGGACAGAATG
TCAAAATGGTTGAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q9KM92

Antitoxin

Source ID Structure
AlphaFold DB A0A1T4SLM9

References