38671

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /DUF1778(antitoxin)
Location 223081..223880 Replicon chromosome
Accession NZ_AP024554
Organism Vibrio cholerae strain IDH-03329

Toxin (Protein)


Gene name - Uniprot ID Q9KM94
Locus tag K6J80_RS14875 Protein ID WP_000118351.1
Coordinates 223081..223614 (-) Length 178 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID A0A0K9UER4
Locus tag K6J80_RS18940 Protein ID WP_000179600.1
Coordinates 223611..223880 (-) Length 90 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
K6J80_RS14835 218405..219277 - 873 WP_000254716.1 DUF3800 domain-containing protein -
K6J80_RS14840 219452..219673 - 222 Protein_193 GNAT family N-acetyltransferase -
K6J80_RS14845 219734..220171 - 438 WP_000503169.1 IS200/IS605-like element IS1004 family transposase -
K6J80_RS14850 220290..220499 - 210 Protein_195 GNAT family N-acetyltransferase -
K6J80_RS14855 220635..221024 - 390 WP_001081302.1 hypothetical protein -
K6J80_RS14860 221181..222098 - 918 WP_000186333.1 alpha/beta hydrolase -
K6J80_RS14865 222332..222634 - 303 WP_000229317.1 type II toxin-antitoxin system RelE/ParE family toxin -
K6J80_RS14870 222622..222879 - 258 WP_000861987.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
K6J80_RS18935 222961..223071 - 111 WP_086010065.1 DUF3265 domain-containing protein -
K6J80_RS14875 223081..223614 - 534 WP_000118351.1 GNAT family N-acetyltransferase Toxin
K6J80_RS18940 223611..223880 - 270 WP_000179600.1 DUF1778 domain-containing protein Antitoxin
K6J80_RS14885 224103..224474 - 372 WP_001164080.1 MazG nucleotide pyrophosphohydrolase domain-containing protein -
K6J80_RS14890 224615..224902 - 288 WP_000426470.1 hypothetical protein -
K6J80_RS14895 225054..225722 - 669 WP_000043871.1 hypothetical protein -
K6J80_RS18945 225739..225801 - 63 Protein_206 acetyltransferase -
K6J80_RS14900 225953..226225 + 273 WP_000246253.1 DUF1778 domain-containing protein -
K6J80_RS14905 226222..226719 + 498 WP_000982260.1 GNAT family N-acetyltransferase -
K6J80_RS18950 226736..226804 - 69 Protein_209 acetyltransferase -
K6J80_RS14910 226921..227025 - 105 WP_228840819.1 DUF645 family protein -
K6J80_RS18955 227216..227338 - 123 Protein_211 acetyltransferase -
K6J80_RS14915 227395..227850 - 456 WP_001245327.1 GNAT family N-acetyltransferase -
K6J80_RS14920 227978..228265 - 288 WP_000221354.1 type II toxin-antitoxin system RelE/ParE family toxin -
K6J80_RS14925 228255..228506 - 252 WP_001250179.1 type II toxin-antitoxin system Phd/YefM family antitoxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 213119..319686 106567
inside Integron - - 213119..312856 99737
flank IS/Tn - - 219734..220171 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

GNAT domain

(97-153)

Antitoxin

Vibrio phage ICP1, Orf50

(5-81)


Sequences

Toxin        


Download         Length: 178 a.a.        Molecular weight: 20171.46 Da        Isoelectric Point: 9.1432

>T38671 WP_000118351.1 NZ_AP024554:c223614-223081 [Vibrio cholerae]
VSWGKEFVELSKSKHDRDSFDCGEQELNTFIKTQAAKHMQAGISRTMVLPSAHPLLNQKFAICAFYSVAPSSISRETLPA
QLAKKLPRYPIPVFLLAQLAVHKEFHGSGLGKVSLIRALKYLWEVNHHMRAYAIVVDCLTDSAQAFYTKFGFEVLCEHNE
RIRMFLPMKTVEQLFNQ

Download         Length: 534 bp

>T38671 NZ_AP024554:c223614-223081 [Vibrio cholerae]
GTGAGTTGGGGCAAAGAGTTTGTAGAACTTAGTAAATCAAAGCATGACCGCGACTCATTTGACTGTGGTGAGCAAGAGCT
AAACACATTTATCAAAACTCAAGCTGCAAAGCACATGCAAGCAGGTATTAGCCGAACAATGGTTTTACCTAGTGCTCACC
CACTGTTAAATCAAAAATTCGCTATTTGTGCCTTTTATAGTGTTGCACCGAGCTCAATCAGCCGAGAAACATTACCGGCA
CAATTAGCAAAGAAACTACCGAGGTATCCAATCCCTGTTTTTCTGTTGGCTCAGTTAGCTGTGCACAAAGAATTTCACGG
TTCTGGACTTGGAAAGGTCAGTCTAATCCGTGCGCTGAAGTACTTGTGGGAAGTGAATCATCACATGAGAGCATACGCAA
TAGTTGTGGATTGTCTGACAGATTCCGCTCAAGCGTTCTATACGAAGTTCGGCTTTGAAGTATTGTGCGAACATAATGAG
CGTATTCGTATGTTCTTACCGATGAAAACGGTAGAACAACTTTTTAATCAATAG

Antitoxin


Download         Length: 90 a.a.        Molecular weight: 9924.49 Da        Isoelectric Point: 4.9107

>AT38671 WP_000179600.1 NZ_AP024554:c223880-223611 [Vibrio cholerae]
MATARLDIRLDEEIKAKAEKASALLGLKSLTEYVVRLMDEDATHVIEEHESIMVKDSVFDEFMAACNKVKAPNQALLEAV
KFTEKSGIK

Download         Length: 270 bp

>AT38671 NZ_AP024554:c223880-223611 [Vibrio cholerae]
ATGGCAACGGCACGTTTAGATATCCGCCTTGATGAAGAGATCAAGGCAAAAGCTGAAAAGGCATCGGCTTTACTTGGTTT
AAAAAGTCTCACTGAATATGTGGTGAGACTTATGGACGAAGATGCGACTCATGTTATTGAGGAGCATGAAAGTATTATGG
TTAAAGACAGTGTTTTTGACGAGTTTATGGCTGCGTGTAATAAAGTAAAAGCACCGAATCAAGCTTTGCTTGAAGCTGTT
AAATTTACAGAGAAGAGCGGTATCAAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q9KM94

Antitoxin

Source ID Structure
AlphaFold DB A0A0K9UER4

References