Detailed information of TA system TA038628

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): /GNAT-DUF1778
• Location: 100048..100814
• Replicon: chromosome
• Accession: NZ_AP024548
• Organism: Vibrio cholerae strain BCH-01536

Toxin (Protein)

• Gene name: -
• Uniprot ID: Q9K2P7
• Locus tag: K6J77_RS14670
• Protein ID: WP_000982260.1
• Coordinates: 100048..100545 (-)
• Length: 166 a.a.

Antitoxin (Protein)

• Gene name: -
• Uniprot ID: Q9K2J6
• Locus tag: K6J77_RS14675
• Protein ID: WP_000246253.1
• Coordinates: 100542..100814 (-)
• Length: 91 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
K6J77_RS14630	95910..96216	+	307	Protein_179	CatB-related O-acetyltransferase	-
K6J77_RS19080	96353..96751	+	399	Protein_180	GNAT family N-acetyltransferase	-
K6J77_RS19085	96875..97045	+	171	WP_001080654.1	hypothetical protein	-
K6J77_RS14640	97045..97446	+	402	WP_000351248.1	type II toxin-antitoxin system death-on-curing family toxin	-
K6J77_RS19090	97449..97559	+	111	WP_082798255.1	DUF3265 domain-containing protein	-
K6J77_RS14645	97634..98047	+	414	WP_000049417.1	VOC family protein	-
K6J77_RS14650	98261..98512	+	252	WP_001250179.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
K6J77_RS14655	98502..98789	+	288	WP_000221354.1	type II toxin-antitoxin system RelE/ParE family toxin	-
K6J77_RS14660	98917..99372	+	456	WP_001245327.1	GNAT family N-acetyltransferase	-
K6J77_RS19095	99429..99551	+	123	Protein_188	acetyltransferase	-
K6J77_RS14665	99722..99846	+	125	Protein_189	DUF645 family protein	-
K6J77_RS19100	99963..100031	+	69	Protein_190	acetyltransferase	-
K6J77_RS14670	100048..100545	-	498	WP_000982260.1	GNAT family N-acetyltransferase	Toxin
K6J77_RS14675	100542..100814	-	273	WP_000246253.1	DUF1778 domain-containing protein	Antitoxin
K6J77_RS19105	100966..101028	+	63	Protein_193	acetyltransferase	-
K6J77_RS14680	101045..101713	+	669	WP_000043871.1	hypothetical protein	-
K6J77_RS14685	101865..102152	+	288	WP_000426470.1	hypothetical protein	-
K6J77_RS14690	102293..102664	+	372	WP_001164080.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
K6J77_RS19110	102887..103156	+	270	WP_000179600.1	DUF1778 domain-containing protein	-
K6J77_RS14700	103153..103686	+	534	WP_000118351.1	GNAT family N-acetyltransferase	-
K6J77_RS19115	103696..103806	+	111	WP_086010065.1	DUF3265 domain-containing protein	-
K6J77_RS14705	103888..104145	+	258	WP_000861987.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
K6J77_RS14710	104133..104435	+	303	WP_000229317.1	type II toxin-antitoxin system RelE/ParE family toxin	-
K6J77_RS14715	104669..105586	+	918	WP_000186333.1	alpha/beta hydrolase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 Integron TA000164, TA000169, TA000166, TA000167, TA000179, TA000170, TA000171, TA000172, TA000173, TA000174, TA000175, TA000176, TA000177, TA000178, TA000168, TA000165, TA010030, TA010035 309750..435387 0.004	inside	Integron	-	-	11978..113648	101670
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 IS/Tn TA000174, TA000175, TA000176, TA010030 416601..417581 0	flank	IS/Tn	-	-	94862..95842	980

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• GNAT domain (86-152)

Antitoxin

• Vibrio phage ICP1, Orf50 (7-86)

Sequences

Toxin

Protein

• Length: 166 a.a.
• Molecular weight: 18527.18 Da
• Isoelectric Point: 8.7753

>T38628 WP_000982260.1 NZ_AP024548:c100545-100048 [Vibrio cholerae]
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG

Nucleotide

• Length: 498 bp

>T38628 NZ_AP024548:c100545-100048 [Vibrio cholerae]
ATGATGAATACGGTACTTCTCGATAAAGATAAGCACGATAGGAACCGTTTCAATTGTGGCACTGAAGCACTCAACAATTA
CTTAAAAGTAATGGCGAGTCAGCAAGCCAAAAAAGACAACACCAGAACCTTCGTTTTGGAAGATGACAATAACAGTGCTT
ATATCATCGGCTTTTACACTCTGACTATGACGCCCATTGATTTGAAAGCCTTGCCCGACAAGTTACAAAAGAAGCACCAA
TCCTCAACCTCTGGAGGGCTCATTGCTCGTTTAGCTGTCGACGATAGATACAAAGGAAAAGGTTTTGGTGAGTGGCTACT
CATTGACGCTCTCAGAAAGCTACTCGCAGCCAGTGACAGTGTAGCGTTCCCTGTTGTCATTGTTGATGCCAAAGATGGTG
CAAAACATTTCTATGAGCGCTATGGGTTTCAAGCGTTTCAAGATGCCGAAAACAAACTCTTCATCACCATTGCTGATATC
AGAGCAAGCTTAGGCTAG

Antitoxin

Protein

• Length: 91 a.a.
• Molecular weight: 9683.22 Da
• Isoelectric Point: 6.2988

>AT38628 WP_000246253.1 NZ_AP024548:c100814-100542 [Vibrio cholerae]
MATTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLLMEALDNPAVVNAKLKL
ASERYESKTQ

Nucleotide

• Length: 273 bp

>AT38628 NZ_AP024548:c100814-100542 [Vibrio cholerae]
ATGGCAACGACTTTGCCTCGCATCACCGCTAGAGTTGATGTCGATACTCAAGATTTACTCGCTAAGGCTGCTGCTCTTGC
TGGTATGTCTAGTATTAACTCATTTGTTTTGAATGCAGCAATCGAAAAAGCAAAACAAGTCATTGAACGTGAGCAAGCTC
TAAAGCTTAGCCAAGCTGATGCCGTATTGCTGATGGAAGCTCTTGATAATCCAGCTGTAGTAAATGCAAAGCTCAAATTG
GCATCCGAACGTTATGAGAGCAAAACTCAATGA

Structures

Toxin

• AlphaFold DB: A0A0Q0KGB1

Antitoxin

• AlphaFold DB: A0A0F2IC79