Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-Phd
Location 388914..389461 Replicon chromosome
Accession NZ_LT992489
Organism Vibrio cholerae strain 4295STDY6534232

Toxin (Protein)


Gene name relE Uniprot ID Q9KM92
Locus tag DG176_RS16110 Protein ID WP_000229317.1
Coordinates 388914..389216 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9KM93
Locus tag DG176_RS16115 Protein ID WP_000861987.1
Coordinates 389204..389461 (-) Length 86 a.a.

Genomic Context

DG176_RS16150DG176_RS16155DG176_RS16070DG176_RS16075DG176_RS16080DG176_RS16085DG176_RS16090DG176_RS16095DG176_RS16100DG176_RS16105DG176_RS16110DG176_RS16115DG176_RS16125DG176_RS16130DG176_RS16135DG176_RS16140DG176_RS16145DG176_RS16165DG176_RS16170
Location: 392535..392807 (273 bp)
Type: Others
Protein ID: WP_000246253.1
Location: 392804..393301 (498 bp)
Type: Others
Protein ID: WP_000982260.1
Location: 384077..384181 (105 bp)
Type: Others
Protein ID: WP_099607150.1
Location: 384238..384837 (600 bp)
Type: Others
Protein ID: WP_001891245.1
Location: 384987..385859 (873 bp)
Type: Others
Protein ID: WP_000254716.1
Location: 386034..386252 (219 bp)
Type: Others
Protein ID: WP_071908318.1
Location: 386316..386753 (438 bp)
Type: Others
Protein ID: WP_000503169.1
Location: 386872..387081 (210 bp)
Type: Others
Protein ID: Protein_329
Location: 387217..387606 (390 bp)
Type: Others
Protein ID: WP_001081302.1
Location: 387763..388680 (918 bp)
Type: Others
Protein ID: WP_000186333.1
Location: 388914..389216 (303 bp)
Type: Toxin
Protein ID: WP_000229317.1
Location: 389204..389461 (258 bp)
Type: Antitoxin
Protein ID: WP_000861987.1
Location: 389663..390196 (534 bp)
Type: Others
Protein ID: WP_000118351.1
Location: 390193..390618 (426 bp)
Type: Others
Protein ID: WP_001882332.1
Location: 390685..391056 (372 bp)
Type: Others
Protein ID: WP_001164080.1
Location: 391197..391484 (288 bp)
Type: Others
Protein ID: WP_000426470.1
Location: 391636..392304 (669 bp)
Type: Others
Protein ID: WP_000043871.1
Location: 393503..393655 (153 bp)
Type: Others
Protein ID: WP_001884520.1
Location: 393977..394432 (456 bp)
Type: Others
Protein ID: WP_001245327.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
DG176_RS16070384077..384181-105WP_099607150.1acetyltransferase-
DG176_RS16075384238..384837-600WP_001891245.1glutathione S-transferase N-terminal domain-containing protein-
DG176_RS16080384987..385859-873WP_000254716.1DUF3800 domain-containing protein-
DG176_RS16085386034..386252-219WP_071908318.1GNAT family N-acetyltransferase-
DG176_RS16090386316..386753-438WP_000503169.1IS200/IS605-like element IS1004 family transposase-
DG176_RS16095386872..387081-210Protein_329GNAT family N-acetyltransferase-
DG176_RS16100387217..387606-390WP_001081302.1hypothetical protein-
DG176_RS16105387763..388680-918WP_000186333.1alpha/beta hydrolase-
DG176_RS16110388914..389216-303WP_000229317.1type II toxin-antitoxin system RelE/ParE family toxinToxin
DG176_RS16115389204..389461-258WP_000861987.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
DG176_RS16125389663..390196-534WP_000118351.1GNAT family N-acetyltransferase-
DG176_RS16130390193..390618-426WP_001882332.1DUF1778 domain-containing protein-
DG176_RS16135390685..391056-372WP_001164080.1nucleotide pyrophosphohydrolase-
DG176_RS16140391197..391484-288WP_000426470.1hypothetical protein-
DG176_RS16145391636..392304-669WP_000043871.1hypothetical protein-
DG176_RS16150392535..392807+273WP_000246253.1DUF1778 domain-containing protein-
DG176_RS16155392804..393301+498WP_000982260.1GNAT family N-acetyltransferase-
DG176_RS16165393503..393655-153WP_001884520.1DUF645 family protein-
DG176_RS16170393977..394432-456WP_001245327.1GNAT family N-acetyltransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic islandcatB9-379325..47629796972
flankIS/Tn--386316..386753437
insideIntegroncatB9-379701..46950989808


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-69)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11726.68 Da        Isoelectric Point: 5.1972

>T294371 WP_000229317.1 NZ_LT992489:c389216-388914 [Vibrio cholerae]
MVEIIWTELALSDLNDIAEYIALENVVAAKQLVQTVFTKVERLADFPESGRVPPELEHLNYREVVVSPCRVFYKYDDAKV
RILFVMRAERDLRRLMLTKQ

Download         Length: 303 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9647.15 Da        Isoelectric Point: 7.3178

>AT294371 WP_000861987.1 NZ_LT992489:c389461-389204 [Vibrio cholerae]
MKVELVTSLKRQATKILADLHDTKEPVLITEHGKPSAYLIDVDDYEFMQNRLAILEGIARGERALADGKVVSHQDAKDRM
SKWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
AlphaFold DBQ9KM92

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A1T4SLM9

References