Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /GNAT-DUF1778 |
Location | 421785..422551 | Replicon | chromosome |
Accession | NZ_LT907990 | ||
Organism | Vibrio cholerae strain A19 |
Toxin (Protein)
Gene name | - | Uniprot ID | Q9K2P7 |
Locus tag | ALC86_RS16470 | Protein ID | WP_000982260.1 |
Coordinates | 421785..422282 (-) | Length | 166 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | Q9K2J6 |
Locus tag | ALC86_RS16475 | Protein ID | WP_000246253.1 |
Coordinates | 422279..422551 (-) | Length | 91 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
ALC86_RS16415 | 417647..417953 | + | 307 | Protein_446 | CatB-related O-acetyltransferase | - |
ALC86_RS16420 | 418090..418782 | + | 693 | WP_001047169.1 | GNAT family N-acetyltransferase | - |
ALC86_RS16425 | 418782..419183 | + | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
ALC86_RS16430 | 419153..419296 | + | 144 | WP_071908341.1 | DUF3265 domain-containing protein | - |
ALC86_RS16435 | 419371..419784 | + | 414 | WP_000049417.1 | VOC family protein | - |
ALC86_RS16440 | 419998..420249 | + | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
ALC86_RS16445 | 420239..420526 | + | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
ALC86_RS16450 | 420654..421109 | + | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
ALC86_RS16460 | 421431..421583 | + | 153 | WP_001884520.1 | DUF645 family protein | - |
ALC86_RS16470 | 421785..422282 | - | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | Toxin |
ALC86_RS16475 | 422279..422551 | - | 273 | WP_000246253.1 | DUF1778 domain-containing protein | Antitoxin |
ALC86_RS16485 | 422782..423450 | + | 669 | WP_000043871.1 | hypothetical protein | - |
ALC86_RS16490 | 423602..423889 | + | 288 | WP_000426470.1 | hypothetical protein | - |
ALC86_RS16495 | 424030..424401 | + | 372 | WP_001164080.1 | nucleotide pyrophosphohydrolase | - |
ALC86_RS19780 | 424468..424893 | + | 426 | WP_001882332.1 | DUF1778 domain-containing protein | - |
ALC86_RS16505 | 424890..425423 | + | 534 | WP_000118351.1 | GNAT family N-acetyltransferase | - |
ALC86_RS16515 | 425625..425882 | + | 258 | WP_000861987.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
ALC86_RS16520 | 425870..426172 | + | 303 | WP_000229317.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
ALC86_RS16525 | 426406..427323 | + | 918 | WP_000186333.1 | alpha/beta hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | catB9 | - | 304666..435761 | 131095 | |
inside | Integron | catB9 | - | 309746..435385 | 125639 | ||
flank | IS/Tn | - | - | 416599..417579 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 166 a.a. Molecular weight: 18527.18 Da Isoelectric Point: 8.7753
>T293833 WP_000982260.1 NZ_LT907990:c422282-421785 [Vibrio cholerae]
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG
MMNTVLLDKDKHDRNRFNCGTEALNNYLKVMASQQAKKDNTRTFVLEDDNNSAYIIGFYTLTMTPIDLKALPDKLQKKHQ
SSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQAFQDAENKLFITIADI
RASLG
Download Length: 498 bp
Antitoxin
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Q0KGB1 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0F2IC79 |