26160

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 432854..433413 Replicon chromosome II
Accession NC_016945
Organism Vibrio cholerae IEC224

Toxin (Protein)


Gene name relE Uniprot ID Q9K2M8
Locus tag O3Y_RS16285 Protein ID WP_000578476.1
Coordinates 432854..433132 (-) Length 93 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID Q9L991
Locus tag O3Y_RS16290 Protein ID WP_000381183.1
Coordinates 433129..433413 (-) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
O3Y_RS16250 428154..428591 + 438 WP_000503169.1 IS200/IS605-like element IS1004 family transposase -
O3Y_RS16255 428655..428873 + 219 WP_071908318.1 GNAT family N-acetyltransferase -
O3Y_RS16260 429048..429920 + 873 WP_000254716.1 DUF3800 domain-containing protein -
O3Y_RS16265 430070..430669 + 600 WP_001891245.1 glutathione S-transferase N-terminal domain-containing protein -
O3Y_RS20350 430726..430830 + 105 WP_099607150.1 acetyltransferase -
O3Y_RS16270 430861..431130 + 270 WP_001114075.1 DUF4160 domain-containing protein -
O3Y_RS16275 431124..431645 + 522 WP_000921691.1 DUF2442 domain-containing protein -
O3Y_RS20355 431944..432069 + 126 WP_001905700.1 DUF645 family protein -
O3Y_RS16280 432320..432715 + 396 WP_001000867.1 hypothetical protein -
O3Y_RS16285 432854..433132 - 279 WP_000578476.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
O3Y_RS16290 433129..433413 - 285 WP_000381183.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
O3Y_RS16295 433607..434122 + 516 WP_000343779.1 GNAT family N-acetyltransferase -
O3Y_RS16300 434306..434719 + 414 WP_000049420.1 VOC family protein -
O3Y_RS16310 435274..436451 + 1178 WP_086010879.1 IS3-like element ISVch4 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island catB9 - 304637..435582 130945
inside Integron - - 309717..435206 125489
flank IS/Tn - - 428154..428591 437


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-89)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(5-70)


Sequences

Toxin        


Download         Length: 93 a.a.        Molecular weight: 10819.59 Da        Isoelectric Point: 5.1651

>T26160 WP_000578476.1 NC_016945:c433132-432854 [Vibrio cholerae IEC224]
MIFWEEASLNDREKIFEFLYDFNPAAAKKTDELIEAKVENLLEQPLIGVQRDGIRGRLLIIPEISMIVSYWVDGSKIRIM
RVLHQKQKFPND

Download         Length: 279 bp

>T26160 NC_016945:c433132-432854 [Vibrio cholerae IEC224]
ATGATTTTCTGGGAAGAAGCATCTCTCAATGATCGTGAGAAAATTTTCGAATTTCTCTACGACTTTAACCCAGCAGCGGC
TAAAAAAACGGATGAGCTCATAGAAGCCAAAGTCGAAAATTTGCTTGAGCAACCACTAATCGGTGTTCAGCGTGATGGCA
TTAGAGGCAGATTGCTTATTATCCCTGAGATATCAATGATTGTTTCGTATTGGGTTGATGGTTCTAAAATTCGAATAATG
CGTGTACTACATCAGAAACAAAAATTTCCAAACGACTGA

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10901.25 Da        Isoelectric Point: 8.0775

>AT26160 WP_000381183.1 NC_016945:c433413-433129 [Vibrio cholerae IEC224]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKALSHDAWLTEQVNQAFEKFDSGKAVFIEHDIAKAR
MAERKAKIRNRGHA

Download         Length: 285 bp

>AT26160 NC_016945:c433413-433129 [Vibrio cholerae IEC224]
ATGGATACTAGAATTCAATTTCGTGTAGACGAAGAAACAAAACGTTTAGCTCAACAAATGGCTGAAAGCCAAGGTCGAAC
TCTTAGCGATGCTTGCCGTGAACTCACTGAACAATTAGCTGAGCAGCAACGCAAGGCATTATCTCACGATGCATGGCTAA
CTGAACAAGTGAATCAAGCATTTGAGAAGTTCGACTCAGGAAAAGCAGTATTCATTGAACATGACATCGCCAAAGCACGA
ATGGCTGAACGTAAAGCTAAAATCCGAAATCGAGGCCACGCATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB Q9K2M8

Antitoxin

Source ID Structure
AlphaFold DB A0A067BL33

References