Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | phd-doc/Doc(toxin) |
Location | 949258..949829 | Replicon | chromosome |
Accession | NZ_CP080466 | ||
Organism | Vibrio cholerae strain ICDC-VC3741 |
Toxin (Protein)
Gene name | doc | Uniprot ID | Q9KMA2 |
Locus tag | K1T75_RS17920 | Protein ID | WP_000351248.1 |
Coordinates | 949258..949659 (-) | Length | 134 a.a. |
Antitoxin (Protein)
Gene name | phd | Uniprot ID | Q8GNG3 |
Locus tag | K1T75_RS18865 | Protein ID | WP_001080654.1 |
Coordinates | 949659..949829 (-) | Length | 57 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
K1T75_RS17875 | 944552..944839 | - | 288 | WP_000426470.1 | hypothetical protein | - |
K1T75_RS17880 | 944991..945659 | - | 669 | WP_000043871.1 | hypothetical protein | - |
K1T75_RS18845 | 945676..945738 | - | 63 | Protein_821 | acetyltransferase | - |
K1T75_RS17885 | 945890..946162 | + | 273 | WP_000246253.1 | DUF1778 domain-containing protein | - |
K1T75_RS17890 | 946159..946656 | + | 498 | WP_000982260.1 | GNAT family N-acetyltransferase | - |
K1T75_RS18850 | 946673..946741 | - | 69 | Protein_824 | acetyltransferase | - |
K1T75_RS17895 | 946858..946962 | - | 105 | WP_228840819.1 | DUF645 family protein | - |
K1T75_RS18855 | 947153..947275 | - | 123 | Protein_826 | acetyltransferase | - |
K1T75_RS17900 | 947332..947787 | - | 456 | WP_001245327.1 | GNAT family N-acetyltransferase | - |
K1T75_RS17905 | 947915..948202 | - | 288 | WP_000221354.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
K1T75_RS17910 | 948192..948443 | - | 252 | WP_001250179.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
K1T75_RS17915 | 948657..949070 | - | 414 | WP_000049417.1 | VOC family protein | - |
K1T75_RS18860 | 949145..949255 | - | 111 | WP_082798255.1 | DUF3265 domain-containing protein | - |
K1T75_RS17920 | 949258..949659 | - | 402 | WP_000351248.1 | type II toxin-antitoxin system death-on-curing family toxin | Toxin |
K1T75_RS18865 | 949659..949829 | - | 171 | WP_001080654.1 | hypothetical protein | Antitoxin |
K1T75_RS18870 | 949953..950351 | - | 399 | Protein_834 | GNAT family N-acetyltransferase | - |
K1T75_RS17930 | 950488..950794 | - | 307 | Protein_835 | CatB-related O-acetyltransferase | - |
K1T75_RS17935 | 950862..951842 | + | 981 | WP_000019370.1 | IS5-like element ISVch5 family transposase | - |
K1T75_RS17940 | 951967..952122 | - | 156 | WP_000751734.1 | hypothetical protein | - |
K1T75_RS17945 | 952290..952724 | - | 435 | WP_000256036.1 | GNAT family N-acetyltransferase | - |
K1T75_RS17950 | 952861..953175 | - | 315 | WP_000071008.1 | DNA-binding transcriptional regulator | - |
K1T75_RS17955 | 953162..953494 | - | 333 | WP_000843587.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
K1T75_RS17960 | 953835..954062 | - | 228 | WP_001894457.1 | DUF1289 domain-containing protein | - |
K1T75_RS17965 | 954011..954124 | - | 114 | WP_001889158.1 | hypothetical protein | - |
K1T75_RS17970 | 954290..954511 | - | 222 | WP_032468461.1 | DUF1289 domain-containing protein | - |
K1T75_RS17975 | 954520..954634 | - | 115 | Protein_844 | acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|---|---|---|---|---|---|---|
- | inside | Genomic island | catB9 | - | 932680..1039634 | 106954 | |
inside | Integron | - | - | 933056..1032792 | 99736 | ||
flank | IS/Tn | - | - | 950862..951842 | 980 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 134 a.a. Molecular weight: 14608.71 Da Isoelectric Point: 4.0128
>T211912 WP_000351248.1 NZ_CP080466:c949659-949258 [Vibrio cholerae]
MDIICFPFERVIEINAFILKTEPGMKGAVDIPKLQGALGRIDNAIVYEGLDDVFEIAAKYTACIAVSHALPDANKRTGLA
VALEYLSLNDFELTQENDLLADAVRDLVIGIINETDFADILYAQYAKEQNSAL
MDIICFPFERVIEINAFILKTEPGMKGAVDIPKLQGALGRIDNAIVYEGLDDVFEIAAKYTACIAVSHALPDANKRTGLA
VALEYLSLNDFELTQENDLLADAVRDLVIGIINETDFADILYAQYAKEQNSAL
Download Length: 402 bp
>T211912 NZ_CP106839:c86115-85783 [Klebsiella michiganensis]
ATGGTAAAACGCTACGTGCCAGATGCAGGTGATCTTATCTGGATAGATTTCGATCCCGTTGCCGGGCATGAGCAGGGAGG
ACACAGACCTGCCGTTGTCCTGAGTCCCTTCGCCTACAACAACAAAGTTGGCCTGCTGCTGTGTGTGCCATGCACTACGC
AAATCAAGGGCTACCCCTTTGAAGTCACGCTATCGGGTAGCAAAGAAGGGGTGGCGCTGTCGGATCAGGTTACATGCGTT
GACTGGCGGGCCAGGAAAGTGACCAAGAAGGCCACGGTTAACAGTACTGAACTTGCAGAAATACGGGCAAAAGCGAAAGC
GCTGATTGGTTGA
ATGGTAAAACGCTACGTGCCAGATGCAGGTGATCTTATCTGGATAGATTTCGATCCCGTTGCCGGGCATGAGCAGGGAGG
ACACAGACCTGCCGTTGTCCTGAGTCCCTTCGCCTACAACAACAAAGTTGGCCTGCTGCTGTGTGTGCCATGCACTACGC
AAATCAAGGGCTACCCCTTTGAAGTCACGCTATCGGGTAGCAAAGAAGGGGTGGCGCTGTCGGATCAGGTTACATGCGTT
GACTGGCGGGCCAGGAAAGTGACCAAGAAGGCCACGGTTAACAGTACTGAACTTGCAGAAATACGGGCAAAAGCGAAAGC
GCTGATTGGTTGA
Antitoxin
Download Length: 57 a.a. Molecular weight: 6287.35 Da Isoelectric Point: 10.7274
>AT211912 WP_001080654.1 NZ_CP080466:c949829-949659 [Vibrio cholerae]
MNRKVEAYGVDAVERPKIKASKKLDLTGDAGRQIVKSETKLALRTHQKTFTKLADM
MNRKVEAYGVDAVERPKIKASKKLDLTGDAGRQIVKSETKLALRTHQKTFTKLADM
Download Length: 171 bp
>AT211912 NZ_CP106839:c86360-86115 [Klebsiella michiganensis]
ATGGCTCAAGCAATAGTTAAAAAATGGGGTAACAGCCCGTCAGTCCGGTTGCCAGTGGCGGTGATGAAAGCAGCGTCGCT
AAAAGTTGATGATACTGTCGATATTGAGGTTGAGGATGGTCGTATCATCATTGTTCCTGTCAGACAGAAAGAGTATTCCC
TCGATGCATTGCTGGCCGGTATTTCCACCGATAATCTTCATGACAAAGCAGATTTCGGCCCGGCACAGGGTAAGGAACTA
CTCTGA
ATGGCTCAAGCAATAGTTAAAAAATGGGGTAACAGCCCGTCAGTCCGGTTGCCAGTGGCGGTGATGAAAGCAGCGTCGCT
AAAAGTTGATGATACTGTCGATATTGAGGTTGAGGATGGTCGTATCATCATTGTTCCTGTCAGACAGAAAGAGTATTCCC
TCGATGCATTGCTGGCCGGTATTTCCACCGATAATCTTCATGACAAAGCAGATTTCGGCCCGGCACAGGGTAAGGAACTA
CTCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A0Q0PN34 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1T4SJJ1 |