Detailed information of TA system TA145899

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): dhiT-phd/-
• Location: 431895..432299
• Replicon: chromosome
• Accession: NZ_CP047304
• Organism: Vibrio cholerae O1 biovar El Tor strain E7946

Toxin (Protein)

• Gene name: dhiT
• Uniprot ID: A0A086SLD6
• Locus tag: GTF74_RS16160
• Protein ID: WP_001114075.1
• Coordinates: 432030..432299 (+)
• Length: 90 a.a.

Antitoxin (Protein)

• Gene name: phd
• Uniprot ID: -
• Locus tag: GTF74_RS16155
• Protein ID: WP_099607150.1
• Coordinates: 431895..431999 (+)
• Length: 35 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
GTF74_RS16120	427396..428313	+	918	WP_000186333.1	alpha/beta hydrolase	-
GTF74_RS16125	428470..428859	+	390	WP_001081302.1	hypothetical protein	-
GTF74_RS16130	428995..429204	+	210	Protein_472	GNAT family N-acetyltransferase	-
GTF74_RS16135	429323..429760	+	438	WP_000503169.1	IS200/IS605-like element IS1004 family transposase	-
GTF74_RS16140	429824..430042	+	219	WP_071908318.1	GNAT family N-acetyltransferase	-
GTF74_RS16145	430217..431089	+	873	WP_000254716.1	DUF3800 domain-containing protein	-
GTF74_RS16150	431239..431838	+	600	WP_001891245.1	glutathione S-transferase N-terminal domain-containing protein	-
GTF74_RS16155	431895..431999	+	105	WP_099607150.1	acetyltransferase	Antitoxin
GTF74_RS16160	432030..432299	+	270	WP_001114075.1	DUF4160 domain-containing protein	Toxin
GTF74_RS16165	432293..432814	+	522	WP_000921691.1	DUF2442 domain-containing protein	-
GTF74_RS16170	433113..433238	+	126	WP_001905700.1	DUF645 family protein	-
GTF74_RS16175	433489..433884	+	396	WP_001000867.1	hypothetical protein	-
GTF74_RS16180	434023..434301	-	279	WP_000578476.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	-
GTF74_RS16185	434298..434582	-	285	WP_000381183.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	-
GTF74_RS16190	434776..435291	+	516	WP_000343779.1	GNAT family N-acetyltransferase	-
GTF74_RS16195	435348..435443	+	96	WP_099607151.1	acetyltransferase	-
GTF74_RS16200	435475..435888	+	414	WP_000049420.1	VOC family protein	-
GTF74_RS16205	435895..436027	-	133	Protein_487	hypothetical protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	catB9	-	307032..436751	129719
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 Integron TA000164, TA000169, TA000166, TA000167, TA000179, TA000170, TA000171, TA000172, TA000173, TA000174, TA000175, TA000176, TA000177, TA000178, TA000168, TA000165, TA010030, TA010035 309750..435387 0	inside	Integron	-	-	312112..436375	124263
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_002506 Vibrio cholerae O1 biovar El Tor str. N16961 IS/Tn TA000179, TA000177, TA000178, TA010035 428335..428772 0	flank	IS/Tn	-	-	429323..429760	437

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Protein of unknown function DUF4160 (9-74)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 90 a.a.
• Molecular weight: 10310.94 Da
• Isoelectric Point: 6.6303

>T145899 WP_001114075.1 NZ_CP047304:432030-432299 [Vibrio cholerae O1 biovar El Tor]
MPEIDALLGLSFCLYFFDNKQHKLPHIHVKYGSYELIIAIETGECLEGYLPNKQRKRAENHILEHREQLMVMWNKAVNGE
NPGKLGDLC

Nucleotide

• Length: 270 bp

>T145899 NZ_CP062708:752670-752984 [Escherichia coli O157:H7]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTAGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCATCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTTGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTTTTTACCGCTGTTCATCGTACTAAGGGGAAAAAATGA

Antitoxin

Protein

• Length: 35 a.a.
• Molecular weight: 3991.79 Da
• Isoelectric Point: 9.2853

>AT145899 WP_099607150.1 NZ_CP047304:431895-431999 [Vibrio cholerae O1 biovar El Tor]
VVSVVVFEFSSMRCQPLRRALYAYRNCLLKDTLL

Nucleotide

• Length: 105 bp

>AT145899 NZ_CP062708:752981-753397 [Escherichia coli O157:H7]
ATGATTGCGATTGCCGACATCTTGCATGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACATCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTACTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGCGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTGCCGGAAATTGGCAGTAAATCTATGGT
GTCACGCGTTTTGAGCGGGAAGAGGAAATTAACGCTGGAACACGCTAAAAAATTGGCAACGCGATTCGGCATTTCTCCCG
CCTTGTTTATTGATTAA

Structures

Toxin

• AlphaFold DB: A0A086SLD6